| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_0824 |
|---|
| Symbol | |
|---|
| ID | 3682349 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007413 |
|---|
| Strand | + |
|---|
| Start bp | 1009463 |
|---|
| End bp | 1010350 |
|---|
| Gene Length | 888 bp |
|---|
| Protein Length | 295 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 637716158 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_321343 |
|---|
| Protein GI | 75907047 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.607099 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAATTAC GACACCTACG CTACTTCGTC ACTTTGGCAG AAGAACTTCA CTTTGGCAAA
GCAGCAGAGA GACTGCATAT TGCCCAACCT CCCCTCAGCC AACAAATTCG CCAGCTAGAG
ATAGAATTAG GGTTTGACCT GTTTCACCGT ACTAAAAGAA CTGTGCGGTT AACAGAGGCA
GGACAAGTGT TTTTAGGTGA AGTGCAGCAA ATTCTCCAGC AGTTGCAGCA AGCAATTCAA
TTAGGGCAAA CAAGCAGTCG GGGCGAAGTT GGACAGTTGA TTGTTGGTTT TGTTAGTTCA
GCCGCGTATA ACATTTTGCC AATTATTCTC CGAAATTTTC GTGCTTGTAC TCCAGCAGTC
AAATTAGAAT TACACGAAAT GACGACAGAC CAACAACTAG AATGGTTGAG GGAAGGTGGT
ATAGATATAG GTTTTATCCG TCCCCCTGTT GAAGAGAACA TATTTAACTG GGAGACAATT
TTTCAAGAGT CGCTAATGGT AGCTTTACCT GAAACACATC TACTGGCAAA TCAATTCAAT
ATTCCTTTAA CATCTTTGGG GAATGAGTCA TTTATTCTAT TTCCGAGAAA AATAGCGCCC
GGACTCTACG ATTTAATTAT CAGTCTTTGT CAACAAGCAG GTTTTAGTCC TCATGTCGCC
CAAGAAGCCA TCCAAATGCA AACTACCGTC AGTTTAGTAG CAGCAGATAT GGGGATAGCT
ATTGTCCCTG CATCTTTGCA AAATCTACAA CGAACCGGAG TAGTTTATAA AAATATCCAA
GAAGCCACTG CAAAAGTTGC ATTAGCAATG ACTTGGCGCA AAAACGAAAC ATCGCCAACT
TTACAGAGAT TTCTGCACAC AGTTCGAGCG CTTCGGGAGT GTTTTTAA
|
|---|
| Protein sequence | MELRHLRYFV TLAEELHFGK AAERLHIAQP PLSQQIRQLE IELGFDLFHR TKRTVRLTEA
GQVFLGEVQQ ILQQLQQAIQ LGQTSSRGEV GQLIVGFVSS AAYNILPIIL RNFRACTPAV
KLELHEMTTD QQLEWLREGG IDIGFIRPPV EENIFNWETI FQESLMVALP ETHLLANQFN
IPLTSLGNES FILFPRKIAP GLYDLIISLC QQAGFSPHVA QEAIQMQTTV SLVAADMGIA
IVPASLQNLQ RTGVVYKNIQ EATAKVALAM TWRKNETSPT LQRFLHTVRA LRECF
|
|---|
| |