| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_0779 |
|---|
| Symbol | |
|---|
| ID | 3680504 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007413 |
|---|
| Strand | + |
|---|
| Start bp | 955322 |
|---|
| End bp | 956995 |
|---|
| Gene Length | 1674 bp |
|---|
| Protein Length | 557 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637716108 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_321298 |
|---|
| Protein GI | 75907002 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG5305] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.00690091 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.0000153401 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | TTGTATAATT GGCACTCTCA AGTTTCGACT CGCTGGTTTC ATCCTTTACT TTTACTAACC
TGGTTTATCA TCGGTCTGGG CTTACGTTTT ACCAACTTGA CCGCCAAGCC TCCTTGGACT
GATGAATTTG CTACTTTAGT GTTTAGCTTG GGGAATAGTT TTTTACCAGT ACCCCTAGAT
CAGGCGATCG CACCTGATAT TCTCTTACAA CCCCTACAAC CAAACCCAGC CTCTGGAATT
GGGGACGTAA TTCACAACTT AATTACGGAA GACAACCATC CACCACTATA TTTTGCCCTA
GTGCATCTGT GGATGAAGTT GTTTCCCAAT CAAGGACAAT TAGTCTCCCT ATTGGCGGCG
CGTTCATTTC CCGCTTTACT AGGGGCAGTC TCCATTCCCC TTACATATAT CTTAGGTAGG
TTAGCCTTCC GTTCTTCATT GGTAGGACAG TTAGCGGCTG GAATGATGGC AGTGTCACCA
TACGGAGTGT ATTTAGGACA AGAAGCACGC CATTACACCT TAGCTATGAT CTGGGTGATT
GCATCCCTTT CCTGCTTAGT AATTGCCACA CGCCACATTC AAAACCGCAC ATTATTACCC
TTCTGGTTAA TCATCTTGTG GGTGGGAATT AATGCTTTGG GGATTGCCAC CCATTACTTC
TTCACCCTGA CTCTTTGTGC AGAAGCCTTG GTATTAATAT TTTTAGCCTG GCAACAATCT
ACACAAACCA AAACTTTAGT ATTTTTCTCA CCCCTTTGGT GGCGCATCTA TGCTGTAGCT
GCTGGTACGG CTGTAGCTGG TTTAGTTTGG CTACCCAGTA TTTTAGAAAA TCGCTATCGC
AGTAGTTTAA CTGCATGGAT TCAAGTTGAT GGCATCGGCT TACACCTAAT CAACCCAATT
TTTCAAGCTT TCGCTGCATG GGTGACAATG ATTATGTTGC TCCCAATCGA GTCATCACAG
TTAGCAGTAG TGATTGCTTC CGGCTTGGTA ATGCTAATTT TTGCTATTTG GGCCACACCG
ATTTTAGTTC GTGGGTTTAA ATTCCAACTA CAACAACCCC AAACCAGCTT GGCGATGCAA
GTATTTATTG GGGTAGTTTT AGGAGCGATC GCTTTATTCT TTATATTGAC TTATATTTTT
GGTGTTGATA TCACACGGGG CGCTCGTTAC AACTTTGTCT ATTTTCCCGC CGTCATTATC
CTCGTGGGTG CTAGCCTAGC CGTCTGTTGG CGAACTAGCA AAAAAGCTGT GATGATCATC
TGGCTGATGG GATTCGTCAG TGCTGTCACA GTTATTTGTA ATTTGGGTTA TCAAAAATAC
TACCGCCCTG ATTTGTTAGT TCAAGTCATT CAACAAAATT CTCAGGTTCC AGTTCTCATT
GCTACAACCC ATAAAACCTT AGTCCAAACT GGCGAAATGA TGGGGATAGC CAGGGAGTTA
AAATTATCTA CTTCACAAAC TTCTACTCAG TTTCTCCTGG CTCATCAAGA AACAGACCCC
AGCACTTCCA CTGTTTCCCT AGAAAATACA CTCAAACAAC TGCCACGACC TTTTGATCTA
TGGCTCGTCA ATTTCCACGC ACCAACAGCA GCAGAAGTCA AGCAATGTTT AGCTGACACC
AAACCGTTAA CCGCCGTAGA CGGCTATGAA TACAAAATCT ATCACTGTCG TTAG
|
|---|
| Protein sequence | MYNWHSQVST RWFHPLLLLT WFIIGLGLRF TNLTAKPPWT DEFATLVFSL GNSFLPVPLD
QAIAPDILLQ PLQPNPASGI GDVIHNLITE DNHPPLYFAL VHLWMKLFPN QGQLVSLLAA
RSFPALLGAV SIPLTYILGR LAFRSSLVGQ LAAGMMAVSP YGVYLGQEAR HYTLAMIWVI
ASLSCLVIAT RHIQNRTLLP FWLIILWVGI NALGIATHYF FTLTLCAEAL VLIFLAWQQS
TQTKTLVFFS PLWWRIYAVA AGTAVAGLVW LPSILENRYR SSLTAWIQVD GIGLHLINPI
FQAFAAWVTM IMLLPIESSQ LAVVIASGLV MLIFAIWATP ILVRGFKFQL QQPQTSLAMQ
VFIGVVLGAI ALFFILTYIF GVDITRGARY NFVYFPAVII LVGASLAVCW RTSKKAVMII
WLMGFVSAVT VICNLGYQKY YRPDLLVQVI QQNSQVPVLI ATTHKTLVQT GEMMGIAREL
KLSTSQTSTQ FLLAHQETDP STSTVSLENT LKQLPRPFDL WLVNFHAPTA AEVKQCLADT
KPLTAVDGYE YKIYHCR
|
|---|
| |