Gene Ava_0708 details

Gene Information

• Locus tag: Ava_0708
• Symbol: rplO
• ID: 3678854
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Anabaena variabilis ATCC 29413
• Kingdom: Bacteria
• Replicon accession: NC_007413
• Strand: +
• Start bp: 882749
• End bp: 883195
• Gene Length: 447 bp
• Protein Length: 148 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 637716036
• Product: 50S ribosomal protein L15
• Protein accession: YP_321227
• Protein GI: 75906931
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0200] Ribosomal protein L15
• TIGRFAM ID: [TIGR01071] ribosomal protein L15, bacterial/organelle

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.0000000739813
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: 19
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAGACTCA ACGATGTTAA GCCCCAAAAA GGCTCGAAAA AACGCCGTCG CCGTGTAGGT 
AGAGGTATCT CTGCTGGCCA GGGTGCTAGT GCTGGTCTGG GTATGAGAGG TCAAAAATCA 
CGTTCTGGTA GTGGTACCAG ACCTGGTTTT GAAGGTGGTC AACAGCCATT GTACCGCCGG 
ATACCCAAGC TGAAAGGTTT TCCTGTAGTT AATCGGAAAA TTTACACTAC GATTAATGTA 
GAGAAGCTAG CTGATCTCCC TGCAAATACA GAAGTAACTT TGGAATCTTT GAGAGCATCC 
GGTATTTTAA CTGCTGTCAA AGGCCCATTG AAAGTTTTGG GTAATGGAGA CTTAGGTGTA 
GCCCTCAACG TTAAGGCAGC AGCTTTCACA GGTCAAGCTC GGAGCAAAAT TGAGGCTGCT 
GGAGGAAGTT GTGAAGTTTT AGGGTGA 

 

Protein sequence

MRLNDVKPQK GSKKRRRRVG RGISAGQGAS AGLGMRGQKS RSGSGTRPGF EGGQQPLYRR 
IPKLKGFPVV NRKIYTTINV EKLADLPANT EVTLESLRAS GILTAVKGPL KVLGNGDLGV 
ALNVKAAAFT GQARSKIEAA GGSCEVLG