Gene Ava_0638 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_0638 
Symbol 
ID3678667 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007413 
Strand
Start bp802769 
End bp804982 
Gene Length2214 bp 
Protein Length737 aa 
Translation table11 
GC content39% 
IMG OID637715966 
Productdiguanylate cyclase 
Protein accessionYP_321157 
Protein GI75906861 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain
[COG4252] Predicted transmembrane sensor domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.0991066 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTAAGC AACTAGGGAA TCCTATTGTG AGGTTAATTC TGGGACTAAA GCAATGGCTG 
AGTCGAGGAC GAAGAGAATT AATTACTGCT TCCGTCGTTT TGGTTTGTGT CCTGATACTG
CGTTCTATAG GATTACTGCA ATCCGTAGAA TTGTCTGCAT TAGACCAATT TTTTCGCCTC
AGACCAAACG AACAGCCTGA TAATCGCATT ACTATCGTAG CCATTGATGA AGCTTCCTTA
CATAAAGGAT TTCCCATTCC TGACGGCATC ATTGCTAATT TATTAAAAAA ATTACAAGCC
AATCAACCTC GTGTTATTGG TTTAGATATT TATCGAGATT TGCCAACCAA AGATGGCCAT
GAAAATTTAG TTGATACTTA TAAAACAATA CCTAATTTAG TCGGTACACA ATTATTATCA
AATGATAAAA GTTATAAAGT TGCGCCACCA CCACAATTAA ATTCCCAACA AATAGGTTTT
AATAACTTAC TCTATGACCC AGACGGCAAA GTACGCCGAA TTTTGTTGTA CTGGCATATT
GGTGAAAATT ATTATGAAAG CTTTGCTTTA AAGTTAGCTT TATTATATTT AAAATCAGAG
AAAGTTTTTC CTAGAAAAGC AGCTAATAAC CCGGAGTATT TACAGTTAGG TAAGTCAGTT
TTTCCTCGAT TTGAACAAAA TGATGGTGCT TACGTTAGAG CTGATGACAA GGGTACTCAA
ATTCTGTCTA ATTTTCCTAA ACCAGGTTGT CGAAATTCGT CTTTAGATTC CTGCGGTTTC
CAAAAGGTTA GTATGCTAGA TGTGCTAGAT GATAAGGTGC CGCGCAGTTG GATAGAGGAT
CGCATTGTCT TAATCGGCTC TACTGCTCCT AGCCTCCAAG ATTTTGTATT TATTCCTTAT
TCAAGTCGTT GGATGAGAGC AGCAAAACCT GTGGCTGGGA TTGAACTGCA AGCTTATTTT
ATTAGTCAGT TAATTTCTGC GGCTTTGGAA GGAAGACCTG TATTAAAAGT GTGGTCTGAT
TTTTGGGAAT ACTTGTGGAT TTTTGCTTGG TCATATTTAG GAGCAGTAGC AGCATGGCGA
ATACGGGGAA AAATTCCCAA TATCGTGGCG ATATTTGTTG CTTGCTGCTT GCTTTTTTTA
AGTGCTTATC TAGCTTTTTT ATCAGGGTGG TGGATACCAT TAGTTCCAGC ACTGCTGACC
TTGGTTGGTT CAGTAATTTG GATGATTAAT TATCTTGCTC ATATGCAGGA AGAGTTAAAG
CGTTCCAAAG AATTTTTACA GCAAGTAATT GATACGATCG CTGACCCAAT TTTTGTAAAA
AATGAGCAAC ATCAGTGGAT TGTTTTAAAT AAGGCTTACT GTCGATTTAT TGGTTATCCT
GAGAGTTTTT TAGTTGAAAA GTCAGATGTT GATTTTTTCC CTAAACATGA AGCTGATGTT
TTTCGACAGC AAGATGAGTT AGTGTTTGAC ACTCAAAAAC CTCAGGAAAA TGAGGAAGAA
TTTACTGATG CTTATGGAAA AACTCATTTA ATTGCTACTA AGCGATCGCT CCACAAGGAT
GCAGCCGGTA ATTTATTTTT AGTTGGGGTG ATCAGAGATA TTACTCAGCG CAAATTGATG
GAGGAAGAAC TCAAGCGCAC GGCAGCTGAG TTGTTTCGCT CTAATAACGA ATTAAAACTG
AAGGAAGACC ATTTGCGTTA TTTAGCTTAT CACGACGCTT TGACCGGTCT TCCAAACCGT
AAATATTTTG CGGAACAACT TTACGAGTCC ATTAATTGGG CAAAAGATAA CAATTTCTCC
CTTGGACTTT TATTTATTGA CTTAGACGGC TTTAAGCAGG TTAATGACAG CCTTGGTCAC
GAAATGGGCG ATCGCTTGTT GGTGGTGATA GCTCAAAGAC TCAGCAATTC TTTACGCGCT
AGTGATACAG TGGCTCGCTT AGGTGGCGAC GAATTTACCG TCATTCTACA GGCGATACCT
AACGTGCAAG TAGCAGCCAA AGTCGCTGAA AAAATTCTAG CGAATATCAC TGAGCCAATT
GTTTTGAACG GATGTACTAC TAAAGTTTCT GTCAGCATTG GTATTAGTAT TTACCCAGAA
ACCAGTTTAG ATCCTGATAC ATTGCTAAAA AAAGCGGATG CAGCCATGTA CCGCGCCAAA
CATTTAGGGA AAAATCGCTT TGAATTGGCA GATAGGGGAA ATACTGAGTC CTGA
 
Protein sequence
MSKQLGNPIV RLILGLKQWL SRGRRELITA SVVLVCVLIL RSIGLLQSVE LSALDQFFRL 
RPNEQPDNRI TIVAIDEASL HKGFPIPDGI IANLLKKLQA NQPRVIGLDI YRDLPTKDGH
ENLVDTYKTI PNLVGTQLLS NDKSYKVAPP PQLNSQQIGF NNLLYDPDGK VRRILLYWHI
GENYYESFAL KLALLYLKSE KVFPRKAANN PEYLQLGKSV FPRFEQNDGA YVRADDKGTQ
ILSNFPKPGC RNSSLDSCGF QKVSMLDVLD DKVPRSWIED RIVLIGSTAP SLQDFVFIPY
SSRWMRAAKP VAGIELQAYF ISQLISAALE GRPVLKVWSD FWEYLWIFAW SYLGAVAAWR
IRGKIPNIVA IFVACCLLFL SAYLAFLSGW WIPLVPALLT LVGSVIWMIN YLAHMQEELK
RSKEFLQQVI DTIADPIFVK NEQHQWIVLN KAYCRFIGYP ESFLVEKSDV DFFPKHEADV
FRQQDELVFD TQKPQENEEE FTDAYGKTHL IATKRSLHKD AAGNLFLVGV IRDITQRKLM
EEELKRTAAE LFRSNNELKL KEDHLRYLAY HDALTGLPNR KYFAEQLYES INWAKDNNFS
LGLLFIDLDG FKQVNDSLGH EMGDRLLVVI AQRLSNSLRA SDTVARLGGD EFTVILQAIP
NVQVAAKVAE KILANITEPI VLNGCTTKVS VSIGISIYPE TSLDPDTLLK KADAAMYRAK
HLGKNRFELA DRGNTES