Gene Ava_0612 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_0612 
Symbol 
ID3678545 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007413 
Strand
Start bp768978 
End bp770300 
Gene Length1323 bp 
Protein Length440 aa 
Translation table11 
GC content37% 
IMG OID637715940 
ProductGAF sensor Signal transduction histidine kinase 
Protein accessionYP_321131 
Protein GI75906835 
COG category[T] Signal transduction mechanisms 
COG ID[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.0127194 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.714429 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTTAAAG CCATTGATGA TGGAATTTTT TTGCAAAATC AAATGTGGCA ACGTGAGCGT 
CTGGCGATCG CTCTTTTATC ATCTTTAAAC TATCGGACTG GAGAACTAAG CGGCTATCTG
TTTAACATTG CTTGTGGAGT CAGCAAGTTA CTCAATGTAG ATTGGTCGGT AGTCACATTG
TGTCAACAAG GATTTGAGAA AGTCCTAGCC AGTAATATTA ATATGGGTGT AGGCGAACAC
GTTTATTCAC TACATGGTTC CCTAACGAAC ACCGTTATAG AAACTGGTAA CTCCTTAGTA
GTAGAAGATA CAAGTAAACA TCCAGAATAT GGTCAGCCTC CAGAAGGCTA CCGAGCTTAT
TTAGGGATAC CGTTACGGAC TGCTGAAGGC GAAGTAATTG GTACTATTTG CTCATTTCAT
CACGAATCAC GAGAGTTTAG TCCAGAAGAA ATCCAGTTTA CAGAATTATT TGCCGAACGT
GCTGCTACAG CCATTGATAA TTATCGCTTA TATAAGGAGC AGTGCCAATT TAATCATATT
TTGGAAGCGG AAGTAGAAAA ACGTACAGCA GAATTAAAAG CAACACAAAG CAAGCTTGTA
GAAAAGGAAA GACTAGCAGC TATTGGTGAA TTTGCAGCCA TGATTGTGCA TGAAATTCGC
AATCCTTTAA CTACAATGAT CATGGGATTA AAATATTCTC AAAAAACAAT TTTGTCATCA
GATGCTCAAG AGCGATTATC ATTAGCAGTT AGTGAAGCTT GTCGCTTAGA TAATCTACTA
AGTGAAATTT TGCTTTATGC AAAACCTCAA GTTTTACAAA TATGTGAATT AGAGGTTAAT
AAATTTATTA GTGAGTTACT TATATTAGTG CGTCAAATGC CAGAAGCACT CTCACGTAAA
ATCGAATTCA TTCCCTCATC AACTTCAGTT AAAATATTAG CAGATAAAGA TAAACTTAAA
CAGTTATTTA TTAATACTAT CCGCAATGCC TGTGAGGCAA TTTCAGCCGG AGAGGTTGTT
CAATGGGAAG TAAATATTTC ATCGCCAGAT GAAGTCTGTA TAAATATTTG TAATCGTGGT
GAACCAATTC CCCCAGAGAT TTTATCAAAA TTAACTCAGC CATTCTTTTC TACAAAACCT
CACGGCACTG GCTTAGGACT TGCCATTGTC CAACGCATCG TCCATGCTCA TTATGGGAAA
TTATCTATTG AGTCTGATAT CACAAAAGGT ACTATAGTAA GTGTACGATT GCCTATAGCT
ACTTTCCAGA CCCTGGGATA TTTTGAAGTT TATAAAGATT ATACTTACCA AGTAACTTCA
TGA
 
Protein sequence
MVKAIDDGIF LQNQMWQRER LAIALLSSLN YRTGELSGYL FNIACGVSKL LNVDWSVVTL 
CQQGFEKVLA SNINMGVGEH VYSLHGSLTN TVIETGNSLV VEDTSKHPEY GQPPEGYRAY
LGIPLRTAEG EVIGTICSFH HESREFSPEE IQFTELFAER AATAIDNYRL YKEQCQFNHI
LEAEVEKRTA ELKATQSKLV EKERLAAIGE FAAMIVHEIR NPLTTMIMGL KYSQKTILSS
DAQERLSLAV SEACRLDNLL SEILLYAKPQ VLQICELEVN KFISELLILV RQMPEALSRK
IEFIPSSTSV KILADKDKLK QLFINTIRNA CEAISAGEVV QWEVNISSPD EVCINICNRG
EPIPPEILSK LTQPFFSTKP HGTGLGLAIV QRIVHAHYGK LSIESDITKG TIVSVRLPIA
TFQTLGYFEV YKDYTYQVTS