| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_0266 |
|---|
| Symbol | |
|---|
| ID | 3682953 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007413 |
|---|
| Strand | + |
|---|
| Start bp | 343463 |
|---|
| End bp | 344443 |
|---|
| Gene Length | 981 bp |
|---|
| Protein Length | 326 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 637715594 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_320787 |
|---|
| Protein GI | 75906491 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4795] Type II secretory pathway, component PulJ |
|---|
| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.343829 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATAAGTC CATTAAAATT TCTCCTAAGT CTGCAATTAA AACACCTCAA AAATAGTCAA
ATAAATAAAG GATTTACCTT AATTGAGCTG CTAGTAGCCA TTATTTTGGC TGTATTAGTC
ATAACACCTT TAATGGGGTT TATGATTAGT GTGTTAAACA GCGATCGCCA AGAACAAGCA
AAAGCCACTA CTGAACAAGA AATTCAAGCA GCATTAGATT ACATGGCACG CGATTTACAG
CAAGCTGTAT ATATATATGA TGCTGATGGA ATAACCAGAG ATCGGAATAC TACTACTGTT
GCTAGTTCAG GAATTAGAGA CCAAATACCG CCTGTTAAAT CTGCGCCTAA TTGTAGCCCT
ACTGGTGCTA GTAATACCAA TGTTTGTACT CCTATACTAG TTTTTTGGAA ACGGGAATTT
GTCGCCAACA GTGTTGGTGT TGGTTCTGCA ACTGACACTG TAAGAGATGA TGGTTTTGCT
TATTCGTTAG TGGCTTACTA TTTAATCACC AATCCCAATG CTGCTAACCC TACATGGTCA
CCTTCCGCGC GGATTGGCAG ATTTGAACTT CGCGGTTCAG TCAATGCTGC TTACTCCAAC
GCTACAGCAA ATACAGGCTT TAATCCACCA CCACTATCAG ACACTTTTAC TGGTTCTACA
CTCAAGGAAA AAATGAACCA ATGGCAGACC GCACTCGGTG CATCAGGTAG TTATACTCAA
CGTGTAGAAA CTTTAGTTGA TTTCATTAGT ACGACTAGCC CGGCAATTAC TTGCCCTGCG
CCAAAACTTG TAGGAAGCCC AACAAGTGGA TTTTCAGCTT GTGTCGATTC CGCAGAAGTA
GTGGCACAAG TTTATTTAAG AGGTAATGCT TTTGTTCGCC TGAACAATAA CAATAATATT
GCCTTTAACA ATAATGTTGC TACTTATTTC CCCAATGGCA GCATTCGCGC CCAAGGTAGG
GGATTTCTCT TTACTAAATA A
|
|---|
| Protein sequence | MISPLKFLLS LQLKHLKNSQ INKGFTLIEL LVAIILAVLV ITPLMGFMIS VLNSDRQEQA
KATTEQEIQA ALDYMARDLQ QAVYIYDADG ITRDRNTTTV ASSGIRDQIP PVKSAPNCSP
TGASNTNVCT PILVFWKREF VANSVGVGSA TDTVRDDGFA YSLVAYYLIT NPNAANPTWS
PSARIGRFEL RGSVNAAYSN ATANTGFNPP PLSDTFTGST LKEKMNQWQT ALGASGSYTQ
RVETLVDFIS TTSPAITCPA PKLVGSPTSG FSACVDSAEV VAQVYLRGNA FVRLNNNNNI
AFNNNVATYF PNGSIRAQGR GFLFTK
|
|---|
| |