| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_0104 |
|---|
| Symbol | |
|---|
| ID | 3683379 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007413 |
|---|
| Strand | - |
|---|
| Start bp | 138309 |
|---|
| End bp | 139547 |
|---|
| Gene Length | 1239 bp |
|---|
| Protein Length | 412 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637715431 |
|---|
| Product | putative acyl-CoA dehydrogenase |
|---|
| Protein accession | YP_320625 |
|---|
| Protein GI | 75906329 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 38 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0140414 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTCAAA TTGAAGAAAA AGTTATAGAT TCCACCTTCA AATTTTCATC TCCGGTTACG
CCTAAATCTC CTGAACTACA AGCTTTGTTT GATTTCATTG CTCTGGGAGC TAGTGAACGC
GATCGCGATC GCATCCTACC TTTTGATGTG GTTGATTTAA TCCGGCGTTC CCGGTTGGGT
GCATTGCGAA TCCCCGTCAC TGAAGGTGGT GGTGGTAGCA CGGCGCGGGA ATTATTCGAG
GTGGTGATTA AGTTAGGCGA TGCTGACCCG AACGTGGCTC ACATTGTGCG GAATCATTTT
TCTGTCACAG AGCGAATTTT GCGTTCTCAA CGCACCGAAA GAAATCGTCG CTGGTTAAAA
GCTGTTGCCG ATGGGGCAAT TATTGGACTT GCTTCTACCG AATTGGAAGT TAAACGGGCT
GGCGGCGGTC AAGTCGTGAA TACAAAATTA ACGCCCGATG GCGACGGCTA TCGTCTGAAT
GGGACGAAGT ATTACAGCAC CGGCAGCCTT TATGCAGACT TGATTTTTGT ACGTGTACTA
GTACCCGACG GCACTACAGC GTTTATCCTC ATTCCTACTA ACCGTGAGGG AATTGAGCTT
GTAGATGACT GGGATGGATT TGGGCAAAGG CTTACAGGCA CAGGAACGAC TAACTTCACT
AATGTGCGCG TAGAGGCAGA AGAAGTAATT TTTGAGACAG ATACAGATAA AGATTATCTG
CCATACAATA TCGTCCCACA ATTATTCTTG ACAGCAATTA ACGCTGGTAT TATTCGTAGC
GTTCTGCGTG ATGCCACAAC CCTCGTTCAT AATCGATCTC GGACTTTCTA CCATGCGGTA
TCTGAGCAAG CAGCAGATGA CCCCATCTTG CAGCAAACCG TCGGACAAAT TTCTGCTCAT
GCCTTTGCGG CGGAAGCGAT CGTTTTAGCC GCAGCCGATG GACTCGATCG CCTTTCTGCG
GCTAAAGCTC AAAGTGAAGA AGCAGAAACG GCTGTAGCGT TAGAAACTTC TTTGAATGCA
GCTAAAGCCA AACTAATTGT TGATGATTTA GCGTTACGTT CAGCCACCTT ACTATTTGAA
GTTGGCGGGG CTTCGACAAC CAAGAAAAGC TCTAACTTTG ACCGTCATTG GCGCAATGCC
CGTACTTTAT CCTCACATAA CCCCAATCAC TTTAAGGCGC GTGCAATTGG CGATTACGAG
ATCAATGGTA AGCCTTTGCC ACAGAGAGGA TTTTTTTAA
|
|---|
| Protein sequence | MTQIEEKVID STFKFSSPVT PKSPELQALF DFIALGASER DRDRILPFDV VDLIRRSRLG
ALRIPVTEGG GGSTARELFE VVIKLGDADP NVAHIVRNHF SVTERILRSQ RTERNRRWLK
AVADGAIIGL ASTELEVKRA GGGQVVNTKL TPDGDGYRLN GTKYYSTGSL YADLIFVRVL
VPDGTTAFIL IPTNREGIEL VDDWDGFGQR LTGTGTTNFT NVRVEAEEVI FETDTDKDYL
PYNIVPQLFL TAINAGIIRS VLRDATTLVH NRSRTFYHAV SEQAADDPIL QQTVGQISAH
AFAAEAIVLA AADGLDRLSA AKAQSEEAET AVALETSLNA AKAKLIVDDL ALRSATLLFE
VGGASTTKKS SNFDRHWRNA RTLSSHNPNH FKARAIGDYE INGKPLPQRG FF
|
|---|
| |