| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_0083 |
|---|
| Symbol | |
|---|
| ID | 3683436 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007413 |
|---|
| Strand | + |
|---|
| Start bp | 106817 |
|---|
| End bp | 112159 |
|---|
| Gene Length | 5343 bp |
|---|
| Protein Length | 1780 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 637715410 |
|---|
| Product | Serine/threonine protein kinase and Signal transduction histidine kinase (STHK) with GAF sensor |
|---|
| Protein accession | YP_320604 |
|---|
| Protein GI | 75906308 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair
[R] General function prediction only
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0515] Serine/threonine protein kinase
[COG3899] Predicted ATPase
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.000111107 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0603915 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTACAT TGCCTAATTA CAAAATTCTA GAATTAATTG ACGAAGGAGT GAAAACTAAT
GTTTATCATG CTATCAGTAT TCCAGATGGT AAACTAGTAG TTATTAAAAT TTTGAAAAAA
GAATACCCTG AATTAAAAGA TATAGCAGCA TTAAAACATG AATATGAGCT AATCAAGAAT
TTAGATATCC CAGGAGTAGT GAAAGCTCAT AGTTTTGAAA AATACAACAA TTATTTTGCC
ATAGTTTTAG AAGATTTCGA TGGTACTTGC CTTTACAAAG TTATTCAAGA GAAGAAAATT
GGGTTACTCG ATTTCTGTAA AATAGGTATT CAAATTACCC AAGCACTAGG GGAATTACAC
CAAAACTATA TTATTCATAA AGATATTAAA CCACAAAATA TTATTGTTAA TTTGGAAACC
AATCAAGTTA AAATAATCGA TTTTTCTATT TCATCATTGT TATTTCAGGA AAAAGCTAAA
CTCAATAATC CTGATTTGCT AGAAGGAACT ATAGCCTATA TCTCTCCAGA GCAAACAGGT
CGAATGAACA GGTCAATTGA CTATCGTACA GACTTTTATT CATTAGGTGT AACTTTTTAT
GAAATGCTCA CAGGTCAGTT ACCATTTGTC GTGACTGACC CAATGGAGTT AGTTCATTGT
CATATTGCCA GACAACCTAC AAAAATAAAC GAATTAATTC CAGAAATACC TGAAGTAGTT
TCTGACATAA TCATGAAATT ACTTAGCAAA ACTGCTGAGG AAAGATATCA AAGTGCTTTT
GGAATTAAAG CTGATTTAGA AAAATGTCTT AATCAGTTAA TCGAAAGTAA TTCTATCACC
ACGTTTATTA TTGGTCAGCA TGATTATTCT AGTCAATTAC AAATTCCTGA GAAATTATAT
GGACGAAAAA CGGAAATAGA TATTTTGATG ACTGCTTTTG AAAATGTCAA TCAAGGTAAT
AAAGAATTAA TATTAGTTGC CGGTTACTCA GGTATTGGTA AATCAGCCTT AGTGAATGAA
ATTCATAAAC CCGTTATCAA AAGTAGAGGC TATTTTATTG CAGGTAAATT TGAGCAATTT
CAGCGTAATA TTCCTTATGC TTCAGTGATT CAAGCCTTTC AAGAGTTAAT ACAGCAATTG
CTAACAGAAA GTGAACAACA ATTAGCTAAT TGGCGAGAAA AAATTTTAGA GGCTTTAATT
CCTAATGCTC AAATTATTAT TGATGTTATT CCTGAACTAG AACTGATTAT TGGTAAACAA
CCAGAAGTAC CACAACTAGG ATCAGCCGAA GCACAGAACC GCTTTAACTT GGTTATGCAA
AAATTCATTA ATGTTTTTGC ACAAAAAGAG CATCCATTAG TTGTATTTTT AGATGATTTA
CAGTGGGCAG ATTTAGCCTC ATTAAAATTA ATTCAATTAT TAGCTATAAA TAGTGATATT
CAATACTTAT TTCTCATAGG AGCTTATCGA GATAACGAAG TTGATGACAG TCATCATTTA
ATGCTGGTTT TACAGGAAAT TGAACAAAAA TGTATTCCCA TCAATATTAT TTACTGCCAA
AACCTTAAAA TAACTGATGT TTGTCAATTA GTTAGTGACA CTCTAAAATC TGGTTTAGAA
GAGTCCAAAG AATTGGCTAA ATTGATTTTC CATAAAACTG CTGGCAATCC ATTTTTTGTC
AACCAATTGC TCAAGTTTAT TCATCAAGAA AATTTACTTG TATTTAATTT TATTACTGGT
CAATGGCAAT GGTATATTCA GTATATTCAG ATGCTTGACA TTACTGATAA CGTTGTCGAT
CTGATGATAG GTAAAATTCA AAAACTCAAA GATAATACAC AAAATATTAT AAAAATAGCC
GCTTGTATAG GCAATCGATT TAATTTAAAT ACTCTATCTT GTATTAACGA AAAATCACAT
AATGCTACAG CATTAGATAT TTGGGAAGCC CTACAAGCTG GTTTAATTAT CCCTTTGAGT
GATAATTATA AACTGCCACA ACTGTTAGAT GATGTTGACG TTTTTGTCAT TGATTATAAG
TTTCTTCATG ATCGTGTACA ACAAGCAGCC TATGCGTTAA TTCCCGATGA GCATAAAAAG
GGAATTCACC TAAATATTGG CAGGCTGCTA TTAAAAAATA TAAATAAAAG TTTACTAGAA
GAAAAAATCT TTGATATTGC TAACCAGTTA AATATGGGTG CTGAACTCAT TACTGTTCCA
GAAGAAAGGT ATAAGTTAGC TTCCTTAAAT CTGATGGCTG GACGTAAAGC GAAGGATTCC
AATGCTTATG AATCTGCTGT AAGCTTCCTT AAGCAAGGTT TAACTCTACT TGATATTGAC
TGTTGGCAGA ACTATTATGA ATTAACTCTT GATCTTCACG TAGAAACTGT AGAATCTGAG
TATTTGAATA CAAATTTTGA GGAAGCAGAA CCATTACTTG CGACTGTTAT CGCTAACAGT
AAAAATATTC TTGATACTGT TAAGGTCTAT GAGAAGAAAA TTCAATTCTA CGTTGGTCAA
AATCGAATGC GAGAAGCATT AGATTTAGAT TTACAGGTAT TAGAAATGCT AGGAGTTTCT
CTGTCCCAAA CTCCACCAAC AGAGTTAAAA ATTGAAGAAT TAATCAATCT GCCGGAAATG
ATTGACCCTA GTAAGCTGGC TGCAATGAGG ATACTAATGA CAGCTATGCC TCCTGCTTAT
TTAGCAGATC CTGCACTTTT ACCATTGATT GCTTTTACAA TGATTGAGCT ATGCTTGCAG
TATGGCAATT CATCTTTTGC AGCTTACGCC TATGGTTTTT ATGGCCTGAT TTTGTGTGGG
CCTCTTAAGA ATATCGAATC AGGTTATAGA TTTGGTAAAT TATCCTTACA AATTTTAAAT
CAATTCAATG CCAAGGAAAT AAAGTCTAAA GTTTATGCCT TGTTTAATAT TTTTGTGAGA
CATTGGAAAG AGCATATTCA AACAACTATA GAACCTTTAC AAGAGGGTGT TAAAAGTGGT
TTAGATACAG GAGATATTGA ATATGTAGGA TACAATGGTC TACTAGTTTG TTGGCATCCT
TTCTGGAGCG GAGAAAATCT AGAAACTGTT GAACAAAGAT TAGATAAATA TATTAATTTA
GCACAAAAGA TACAGCAAGA ACACTTTACC TTTTGTTTGC TGATCTTGAA ACAGCTAATA
ACTGAACTTA AACAAGGTCT AAAAAATGAA GTTTACTTAG ACGGTGATGA CTTCAATGAT
TCAATAATGC AGAGAATGGC AGGTAACATT ACAGCTATAT TTTATGCTTA TCTTGCCAAA
AGTATGTTGA GTTATTTTTT TAAAGATTAT AGTCAGGCTG TAAAAAATGC TGAATTAGCA
CAGCAGTATG AAGTTGCTGT TGGTGGCACC TTTTATTTAA TTGAATATAA GTTTTATTAC
TCTCTGGGAC TGCTAGCTCT TTGTTTAAAT ACAACCTCTG ATGCAGATAT AAAATCTGCC
TTAGAAAAAG TATCAGAAAA TCAGCAGCAA TTAAAAGAAT GGGCAGATCA TGCACCTGCA
AATAATCAGC ATAAATATGA ACTAGTAGAG GCAGAAAAAG CACGAGTATT AGGACAAGTA
TTAATAGCGA TGGAGTATTA TGAGTGTGCC ATTCAAGGCG CGCATAAGTT TGGATATATT
CATGAAGAAG CACTAGCTTA TGAATGTGCG GCAGAATTTT ACTTTAGTTT GAAGAGAAAT
GAATTTGCTT GCCTCTACAT AACAAAGGCA CACTATGGTT ATCGTCATTG GGGAGCAATT
GCTAAAGCTA GAAATTTGGA ATCCAAATAT CCAGAATTAA CTGCTAAGAT ATCTAATCAA
TATCCGGCAG GTTTTATAAA TACTAATATT ACTACTTCTA CTGCTAGTGA GAAATCAGGT
GGATTAGATT TAATTACGGT TATTAAAGCC TCACAGACCC TGTCAGAAGT TATTTTACTA
GATAATTTAC TAGAAAAGTT AATGACAATT TTGATTGAGA ATGCTGGCGC TCAAACTGGT
ATTCTGCTGT TGGAAAAAGC CGGGAATTTA TTGATTGAAG CTAAGGCAAG TGTAGATAAA
GATGATATAA CTGTTGGTCA ATCAATACCA TTTGAAGATA GTCAACAATT ACCAATATCT
GTGATTAATT TTGTTAGAAG AACAAGGAAA GATGTAGTTC TATCTGATGC CAGTAATGAA
GGAAGCTTTA CCCTAGATCC CTACATTGTT AAGCATAATA TTAAGTCTAT TATCTGTACT
TCTATTTTGA ATCAAGGTAA ATTAATCGGT ATACTTTATT TAGAAAACAA CTTAATAGTA
GGAGCATTTA CCGCAGACAG AATACAGATA TTAAAATTAC TATCTTCACA AGCAGCTATT
TCCCTTGAAA ATGCTCAACT TTACGCTAAT TTAGAAGAAA AGATAGAAGA AAGGACTAGG
GAATTAAATG AAAACAACTT GCGCTTAAGG CAAACATTAC ACGAATTGAA ATTGACACAA
ACTCAGCTTA TTCAGACAGA AAAAATGTCT AGTTTGGGGC AAATGGTTGC TGGCATCGCT
CACGAAATTA ATAACCCTGT AAGTTTTATT CATGGTAACT TAAGTCACAT TGATAATTAT
GCAAATGATT TACTTACTTT AATTGACATT TATCAAACTA TTTATCCTGA AGCAACCCCA
GAAATTGAAG AGTTTTTAGA AAATATTGAC GTTGATTTTA TTAAAGAAGA TATGCCGAAA
ACTTTATCTT CTATGAAAAT TGGTACACAG CGTATTCGGG AAATTGTGCT GACACTGCGT
AATTTCTCCC GGTTAGATGA GGCTGAGATG AAGGCTGTGA ACATTCATGA GGGGATTGAA
AGTACTTTAC TGATTTTACA AAGTCGTCTC CAAGCCAAAC CAGGTAAGCC TGCAATAGAG
ATTATTAAGA ATTATGCTGA ATTACCAAAA GTTGAGTGTT ATACTGGTCA ATTAAATCAG
GTATTCATGA ATATCCTCAA TAATGCCATT GATTCTTTAG AAAAGTTAAA TCAGGAACAT
AATTTAGAGG AGATAAAGAC TGATCCTAGT GCGATCGCTA TTCGTACCGA AGTAGTCAAT
CCTGATTTAG TCGCTATTTC CATTAAGGAT AATGGATTGG GGATGAGTGA TAGCGTTAGA
AAAAGAATAT TTGACCCTTT CTTCACGACT AAACCTATAG GACAAGGTAC TGGTTTAGGA
TTATCAATCA GTTATCAAAT TGTAGTAGAT AAACACCGGG GTACCATAGA GTGCATTTCT
ACACCTGGGC AAGGTGCAGA ATTTATCATT CAAATTCCCT GTCGGCAAAA GCAGGTAATA
TAG
|
|---|
| Protein sequence | MITLPNYKIL ELIDEGVKTN VYHAISIPDG KLVVIKILKK EYPELKDIAA LKHEYELIKN
LDIPGVVKAH SFEKYNNYFA IVLEDFDGTC LYKVIQEKKI GLLDFCKIGI QITQALGELH
QNYIIHKDIK PQNIIVNLET NQVKIIDFSI SSLLFQEKAK LNNPDLLEGT IAYISPEQTG
RMNRSIDYRT DFYSLGVTFY EMLTGQLPFV VTDPMELVHC HIARQPTKIN ELIPEIPEVV
SDIIMKLLSK TAEERYQSAF GIKADLEKCL NQLIESNSIT TFIIGQHDYS SQLQIPEKLY
GRKTEIDILM TAFENVNQGN KELILVAGYS GIGKSALVNE IHKPVIKSRG YFIAGKFEQF
QRNIPYASVI QAFQELIQQL LTESEQQLAN WREKILEALI PNAQIIIDVI PELELIIGKQ
PEVPQLGSAE AQNRFNLVMQ KFINVFAQKE HPLVVFLDDL QWADLASLKL IQLLAINSDI
QYLFLIGAYR DNEVDDSHHL MLVLQEIEQK CIPINIIYCQ NLKITDVCQL VSDTLKSGLE
ESKELAKLIF HKTAGNPFFV NQLLKFIHQE NLLVFNFITG QWQWYIQYIQ MLDITDNVVD
LMIGKIQKLK DNTQNIIKIA ACIGNRFNLN TLSCINEKSH NATALDIWEA LQAGLIIPLS
DNYKLPQLLD DVDVFVIDYK FLHDRVQQAA YALIPDEHKK GIHLNIGRLL LKNINKSLLE
EKIFDIANQL NMGAELITVP EERYKLASLN LMAGRKAKDS NAYESAVSFL KQGLTLLDID
CWQNYYELTL DLHVETVESE YLNTNFEEAE PLLATVIANS KNILDTVKVY EKKIQFYVGQ
NRMREALDLD LQVLEMLGVS LSQTPPTELK IEELINLPEM IDPSKLAAMR ILMTAMPPAY
LADPALLPLI AFTMIELCLQ YGNSSFAAYA YGFYGLILCG PLKNIESGYR FGKLSLQILN
QFNAKEIKSK VYALFNIFVR HWKEHIQTTI EPLQEGVKSG LDTGDIEYVG YNGLLVCWHP
FWSGENLETV EQRLDKYINL AQKIQQEHFT FCLLILKQLI TELKQGLKNE VYLDGDDFND
SIMQRMAGNI TAIFYAYLAK SMLSYFFKDY SQAVKNAELA QQYEVAVGGT FYLIEYKFYY
SLGLLALCLN TTSDADIKSA LEKVSENQQQ LKEWADHAPA NNQHKYELVE AEKARVLGQV
LIAMEYYECA IQGAHKFGYI HEEALAYECA AEFYFSLKRN EFACLYITKA HYGYRHWGAI
AKARNLESKY PELTAKISNQ YPAGFINTNI TTSTASEKSG GLDLITVIKA SQTLSEVILL
DNLLEKLMTI LIENAGAQTG ILLLEKAGNL LIEAKASVDK DDITVGQSIP FEDSQQLPIS
VINFVRRTRK DVVLSDASNE GSFTLDPYIV KHNIKSIICT SILNQGKLIG ILYLENNLIV
GAFTADRIQI LKLLSSQAAI SLENAQLYAN LEEKIEERTR ELNENNLRLR QTLHELKLTQ
TQLIQTEKMS SLGQMVAGIA HEINNPVSFI HGNLSHIDNY ANDLLTLIDI YQTIYPEATP
EIEEFLENID VDFIKEDMPK TLSSMKIGTQ RIREIVLTLR NFSRLDEAEM KAVNIHEGIE
STLLILQSRL QAKPGKPAIE IIKNYAELPK VECYTGQLNQ VFMNILNNAI DSLEKLNQEH
NLEEIKTDPS AIAIRTEVVN PDLVAISIKD NGLGMSDSVR KRIFDPFFTT KPIGQGTGLG
LSISYQIVVD KHRGTIECIS TPGQGAEFII QIPCRQKQVI
|
|---|
| |