| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_0054 |
|---|
| Symbol | |
|---|
| ID | 3683563 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007413 |
|---|
| Strand | + |
|---|
| Start bp | 64368 |
|---|
| End bp | 67025 |
|---|
| Gene Length | 2658 bp |
|---|
| Protein Length | 885 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637715381 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_320575 |
|---|
| Protein GI | 75906279 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4995] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.494605 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATAAAA CTACTAGGGT CTACTATCCT GATTTTGTTA CAGGTAGAAT ACGGAAGATA
AAAGGTAAGC TGTTCAAGTT CTTACGTTTG GCTTTGTGTT TTCTGTTGGC GTTGATCTGC
ACGGTGAATT CGCCAGTGCT GGCAAGAGTA GTCACCTCAA CTGATACCGC ACAAGTCACT
TCTACCATCT CCCTAGTAGA ACAGGGTAAA GCCCTATACG ATACAGGCAG GTTTGCCGAA
GCAGCGCAAA TATTACAGCA GGTGGCGCAG GAATATCAGC AAAAGGGTGA AAATCTCAAA
TTAGCAGCGA CTCTCAGTAA CTTATCTTTA GCCTATCAGC AAATAGGTGA GTGGCAACAA
GCACAGCAGG CGATTACAGA CAGCTTAAAT TTACTTGAGG GAAAAGAGCA GAACCCCCAA
GTATTAGCCC AATCATTAGA TATTCAAGGC CGTCTGCAAC TGGCGATGGG TAAACCAGAG
GCAGCTTTAA GCACTTGGCA GCGCACAGCC AAGATATATC AACAAACTAA AAATTTTCAT
GGCGAAGTGC GATCGCAAAT CAATCAAGCC CAGGCATGGC GGACACAAGG CTTTTATCGT
CGGGCGGTGA AAGTTTTACT AGAAGTTAGG CAAAAATTAC AATCACAGCC AGACTCCCTA
GAAAAAGCAG TGGGATTGCG ATCGCTTGGT GATGCTCTGA TGGTAGCAGG GAATTTAATG
GACTCCCGCA CTACCTTAGA ACAGAGTCTA GAAGTTGCCA AGCGCTTGGC AATACCTGGG
GAAATTGCAG CTAGTTACTT TAGTTTAGGA AACAATACCC GCGCTAAACT GCAAATATCA
GAAGCGATCA ACTACTATCA ACAAACAGTA GCCACATCCC CCTCACCTTT AACGAAAATT
CAAGCCCAAA TCAACCACCT CAGCTTGCTG CTGGAGAACG AAAAATTTAC GGAAGTTGCC
ACTCTGATTC CAGCAATACA AGCCCAAATC AACCAATTAC CCCCTAGTCA TGCGGCTATC
TACGCCGAGA TTAACTTTGC TCAAAGTCTC ATGAAACTGA CGAGTTCCGA CAACCAAGGG
CGGAATAAAA ATGTTCCATC AGCACCAAGC ACTCAGGATG TAGCCAAATT ATTAGCAACC
ACTATCCAAC AAGCCCGCAG TTTGGATGAT AAACGGGCAG AAGCCTATGC AATGTTGAGT
TTGGGGAATT TGTATGAACA AAACCAGCAA TTGCCAGAAG CCAAAAGTCT GACCCAACAA
GCCTTAATCT TAGCCCAGGC TAGTAACGCG TCAGACATTA TCTATCGCTT GCAGTGGCAG
TTGGGGCGGT TGCTATGGGC GCAAAAAGAT ATGTCTGGTG CGATCGCCGC TTATGATACA
GCAGTAGAAA GCCTAAAATC CCTACGCAGT GACTTAGTAG CTGTCAATCA AGATGTGCAG
TTTAACTTCC GTGACAGTGT AGAACCCATC TATCGGCAAT CGGTGGAGTT ATTGTTGTCA
TCCCAGCCAG AAAAAGTTAA TGACAAAATT CTCGATAAAG CCCGTCAACG GATTGAAGCA
TTGCAATTGG CAGAATTAGA TAACTTCTTT CGGGAAGCTT GCTTGCAAGG CGAAACAGTG
TTACTCGATC AAGTGGTAGA CCAAGATAAC CCCACAGCGG CGATTCTCTA CCCGATTATT
TTGCCAAAAC AGATTCAGGT AATCGTTAAG ATTCCCCACA AACCTTTGCA ACTTTACAGC
ACTAATGTTG AACAAAGAGA AGTTGACGAA GTTCTGAGCG AACTACGCAA AAACCTTGTT
CGTCCCACAG CTAACAAAAA CGTCAAAACT CAGTCGCAAC AGGTTTATAA CTGGCTCATC
AAACCTATTG AATCAGAATT AGCAGCTAGT GGGGTAAAAA CTCTCGTGTT TGTTCCCGAT
GGTTTATTAC GCAATTTACC ACTAGGCGCA CTTTATGATG GACAGCAATA CTTAATAGAA
AAATATGCGA TCGCCTTGAG TGTAGGTTTG CAACTCCTCG ACCCCAAACC CCTACAACGA
GGAGACCTGA GAGCATTAAC GGCTGGACTC ACTCAACCCC CACCAAACTA CCCCAACTTT
GCCCCATTAC CTGCAATCAA GTCGGAAGTA GACTTAATTG CTAGCGCAGG AGTTTCCATT
ACGAGTTTAT TCGACCAGCA ATTTACCCGC GAAGCACTAG AAAAAGAAGT CAACACAGAA
CCATTTAACG TAGTTCATTT AGCCACACAT GGCCAATTTA GTTCCCGTGC TGAAAACACC
TTTATTTTGG CAGCAGATGG GCCAATTAAC GTTACCCAGT TCGATACCTT GCTTCGCAGT
CGAGAACAAA TTCGTCCGAG TGCAGTAGAA CTATTAGTTT TAAGCGCTTG TCAAACCGCA
GCCGGAGATA GTCGCGCTGC TCTTGGTTTA GCAGGAGCCG CAGTCCGCGC CGGCGCACGC
AGCACGGTAG CATCTCTGTG GCAAATTGAT GATGAATCAA CAGCTTTATT GGTTGGTGAA
TTCTATCGAG AACTCAAAAA CAACAACATC ACTAAAGCCG AAGCCCTCCG CCGCGCCCAA
CTAAAATTAT TACAACATCC CAACTACAGC GCCCCAAGTT ACTGGTCTGC CTACGTGTTA
ATTGGTAATT GGTTGTAA
|
|---|
| Protein sequence | MNKTTRVYYP DFVTGRIRKI KGKLFKFLRL ALCFLLALIC TVNSPVLARV VTSTDTAQVT
STISLVEQGK ALYDTGRFAE AAQILQQVAQ EYQQKGENLK LAATLSNLSL AYQQIGEWQQ
AQQAITDSLN LLEGKEQNPQ VLAQSLDIQG RLQLAMGKPE AALSTWQRTA KIYQQTKNFH
GEVRSQINQA QAWRTQGFYR RAVKVLLEVR QKLQSQPDSL EKAVGLRSLG DALMVAGNLM
DSRTTLEQSL EVAKRLAIPG EIAASYFSLG NNTRAKLQIS EAINYYQQTV ATSPSPLTKI
QAQINHLSLL LENEKFTEVA TLIPAIQAQI NQLPPSHAAI YAEINFAQSL MKLTSSDNQG
RNKNVPSAPS TQDVAKLLAT TIQQARSLDD KRAEAYAMLS LGNLYEQNQQ LPEAKSLTQQ
ALILAQASNA SDIIYRLQWQ LGRLLWAQKD MSGAIAAYDT AVESLKSLRS DLVAVNQDVQ
FNFRDSVEPI YRQSVELLLS SQPEKVNDKI LDKARQRIEA LQLAELDNFF REACLQGETV
LLDQVVDQDN PTAAILYPII LPKQIQVIVK IPHKPLQLYS TNVEQREVDE VLSELRKNLV
RPTANKNVKT QSQQVYNWLI KPIESELAAS GVKTLVFVPD GLLRNLPLGA LYDGQQYLIE
KYAIALSVGL QLLDPKPLQR GDLRALTAGL TQPPPNYPNF APLPAIKSEV DLIASAGVSI
TSLFDQQFTR EALEKEVNTE PFNVVHLATH GQFSSRAENT FILAADGPIN VTQFDTLLRS
REQIRPSAVE LLVLSACQTA AGDSRAALGL AGAAVRAGAR STVASLWQID DESTALLVGE
FYRELKNNNI TKAEALRRAQ LKLLQHPNYS APSYWSAYVL IGNWL
|
|---|
| |