| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_0004 |
|---|
| Symbol | |
|---|
| ID | 3679666 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007413 |
|---|
| Strand | - |
|---|
| Start bp | 4122 |
|---|
| End bp | 5084 |
|---|
| Gene Length | 963 bp |
|---|
| Protein Length | 320 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 637715331 |
|---|
| Product | binding-protein dependent transport system inner membrane protein |
|---|
| Protein accession | YP_320525 |
|---|
| Protein GI | 75906229 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.101832 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATAAAT ATTTAATCAA TCGTCTACTA GTTGCTATCC CCACACTAAT TGCTATTAGT
CTTGTCATAT TTACTATTTT GGCATTAGCC CCCGGTGATC CCATGGGTGA ATTTGCCCTG
AATCCTTCCA TCACAGCAGA GGTGAGGGAA AATATCAAAA GGTCTTTAGG ATTAGACCAA
CCAATTCATA TTCGTTATAT CAAGTGGGTG ATAGCTTTTG TGCGTGGGGA TATGGGCTAT
TCTTTCACTA GTCGCAGTCC TGTAATTGAT TTAATTCTGC AACGTCTACC GACAACATTA
TGGGTAGTTG GTGCTGCTTA TTTAATAGGT GCAATTCTCG CTATTCCGTT AGGCGTGATT
TCTGCCCTCA AGCGCCATAC AGTTATTGAT CATGTTTTAA CTACTTTAGT ATTTTTCGGC
TTTTCTCTGC CGACTTTCTT CACAGGTTTA CTATTTATTA TTATCTTTAG TATTCAATTG
AAATGGTTGC CTTTTATTTA TAACAGTACA TTACAAGTAA AAGATTGGCA GAGTTTTATA
GCCCAAATCC AACAATCTAT TATGCCAATT TCTGTATTAG CACTTTGGCA AACAGCTATG
CTCATGCGCT TTGTCCGTTC AGAAATTTTG GAAAATATCC ATCAAGATTA TGTCCGGACT
GCTTATGCAA AAGGATTATC CAAATTTGTA GTGATTCGAC GGCATATTTT ACGAAATGCC
TTAATTCCTG TAGTCACATT AATAGCATTG GATATTCCTA GTGTGTTTAC AGGTGCTTTG
GTCACAGAAA AAGTTTTTCG TGTTCCTGGT ATCGGAGCTT TATTAATTGA CTCTATTTAT
AAAAATGATA CGCCAGTGGT GATGGCAATT ACCTTTATAT ATGCAATTTT AATTGTGATT
TTTAACCTAG TTGCCGATAT TCTCTATGGT TTCTTAGATC CTCGCGTTAA ATATACGAAA
TAA
|
|---|
| Protein sequence | MNKYLINRLL VAIPTLIAIS LVIFTILALA PGDPMGEFAL NPSITAEVRE NIKRSLGLDQ
PIHIRYIKWV IAFVRGDMGY SFTSRSPVID LILQRLPTTL WVVGAAYLIG AILAIPLGVI
SALKRHTVID HVLTTLVFFG FSLPTFFTGL LFIIIFSIQL KWLPFIYNST LQVKDWQSFI
AQIQQSIMPI SVLALWQTAM LMRFVRSEIL ENIHQDYVRT AYAKGLSKFV VIRRHILRNA
LIPVVTLIAL DIPSVFTGAL VTEKVFRVPG IGALLIDSIY KNDTPVVMAI TFIYAILIVI
FNLVADILYG FLDPRVKYTK
|
|---|
| |