| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_C0193 |
|---|
| Symbol | |
|---|
| ID | 3677993 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007412 |
|---|
| Strand | - |
|---|
| Start bp | 227477 |
|---|
| End bp | 230194 |
|---|
| Gene Length | 2718 bp |
|---|
| Protein Length | 905 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637715273 |
|---|
| Product | integrase catalytic subunit |
|---|
| Protein accession | YP_320467 |
|---|
| Protein GI | 75812850 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.952164 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.00648226 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACAGACG ACGAATTTGA TTATTGGTGT AAGCAACAGC AACTAACGGC ATCCTGCAAA
GACTTAATCG CCGCAATTCG CGCTGCGCCA CCTTCTCGCA GAGTACAAGG ACGCGCCAAG
AACGTTAGTG GAGTTTACCC TAGCCGTAAA ATGGGTCAAA CCATTCAATT TGAGAGCCAC
ACAGTAGAAC TGTGGGCGAT TTATCAAATG GAACATGACC CCCAGGTGTT AGAGTACTAT
GATCAACCAC CGCCATTTAA AATTCAGTAC CAAAACCAAA ACGGGCGAAA AATAGGTCAT
TATCATACCC CAGACTTCTT CGTACTGCGT TCAAGTGGTG CAGCCTGGGA AGAATGGAAA
ACCGAAACCG AATTAAAACG ACTAGCCCAA AAATACCCTT CACGCTACCA AAAAACCGAA
ACTGGTCATT GGCATTGCCC ACCAGGAGAA GCTTATGCCG CATCATTTGG ACTCAAATAC
CATGTTCGTA CCGATACCGA ACTAAATCCC ATATTCACTC AAAACCTAAT GTTTTTAGAA
GATTACTTTA GGTTCAGTGC CAATATCCCC CACTCCATTA CAGAACAAAT CTCTTCAGCA
GTTCAAGCCA CTCCAGGAAC AACCATAGCC ACTACACTTG CAACCATACC TGGAGTGCGT
GCCAACGATA TCTACGCCAT GATTGCCACA GAGCAACTCT ACGTAGACTT GTATGCAGTT
CCCCTAGTGG AGCATTGGCG AGTTCAATTA TGGGCAGACC AACAAACTCA TACTGCTCAT
ACACATTTAG CCATAGGGAC AACTGGGCAT CATCAACAAA TCATCTCGCC CACAACACTT
TTGCCCAATA CCTTATTAGT CTGGGACGCA CAACTTTGGA CTTTAGTTAA CTTGGGCGAG
AAGACAACCA CACTTTTACC TGAAGTCGGG CAACCAATGC AACTGCCCAC AGCATTTTTT
CTGCAATTAT TTGATAGCGG CACTATCAAA ATTCATACTT CAGAAACACA CACAACCATC
AATGAAAAAG TGCGTGAATT GATGGATGCC GCCTCGCCTA CGGATCTAGA AAGAGCTAAT
CACAGATTTC ATCTAGTACA AGCATATTTC CAGCACCGCA CAGACATATA TAAGGACATA
CCTCAAAGCA CCTTGTCTCG ATGGGTCAAA CAGTTTCGGG AAGCAGAAGC CACTTTTGGT
TGCGGTTATG TTGGTTTGCT CCCACGTACC GCTAGTAGAG GAAATCGCCT ACCCAAAGCA
CCAACAGATG CAAGCAAATT ATTAGATCAA TTTATTACCG AACACTTTGA GACACCAAGA
CAAGCCCCAG CCGCTTCCGT TTATCGCGCC TATACAAGAG CCTGCTGTGC TGCCAACATC
CCACCACTGA GTCAGCGCAC ATTTTATACT CGCCTAAAAA AGCGTCCCAT CCATGAGCAG
ACTTTAAAAC GTCAGGGGGC AAAAGCCGCA TACGCAACAG AACCGATTGT TTTAGAACTA
GCTAAAACTA CACCCAGGCA TGGAGACAGA CCCTTTGCTA TCTGCCATCT TGACCACACC
CAACTCGATA TCGAATTACG TTCCCAAGTA ACTGGTCGGA ACTTAGGACG ACCTTGGCTG
ACATTACTGA TTGATGCCTA CTCCCGACGC ATCTTAGCAG TTTATCTTAC CTTTGACCCA
CCTTCTTACA GGTCTTGCAT GATGGCACTA CGGTTGTGTG TCCAGCGTGA GGGTCGTTTT
CCCCAATCCG TAGTTGTAGA TGGCGGCAAG GAATTTCATA GCGTTTACTT TGATACCTTA
TTAGCACGTT ACCACTGCAT TAAAAAGACA AGACCCGGTG GTAAACCTCG TTTTGGCTCA
GTAGTTGAGA GATTATTCGG CACAACCAAT ACTGAATTTA TCTTTAACTT ACTGGGCAAC
ACCCAAGCCA GTAAGCAGCC GCGTCAACTT ACTTCCTCTG TTGACCCCAA ACAACTTGCC
GTTTGGACAT TGGCAGATTT ATATACCTAC CTGTGTGAGT GGGCATACAC CATTTATGAC
ACGAGCATAC ATGATTCCTT GGGTGAGACA CCATTACAAG TTTATACCGA CGCTATTGCT
GCCACTGGGG AGAGGGAACA CCGACGCATT GCATACAACG AAGACTTCCT CATGGCAACA
CGCCCTAGTA CACCCAAAGG CAACGCTAAA GTCCAGCCTG GACAGGGAAT AAAAGTCAAT
TATCTTTATT ACTGGAACGA TGCTTTCCGC AATCCGGTTG TCGAAAAGAC CAAAGTCAGT
GTGCGCTATG ACCCTTTTGA TATGGGTGTA GCTTATGCGT ACTTAGAGGG AAGATGGGTC
AAATGTATCT CCCAGTATTA CAGCACCTTT GCCGGACGCA CGGAGAAAGA AGTGCTATTA
GCTGCCCAAG AAATTAGACA ACAAGATAAG CGTAATGCTG TGAGTACAAA TATCTCTGCC
AAACGCCTTG CCGACTTCAT CGCGGCGGTG CAAGAACATG AAACCTTGCT CATGCAACGG
TTACGGGATT TGGAAGCGGT TGGGGTACTA GAGAATGTAA CACCCAATAC TGAAGGTGTA
TCCCAGTTCC CAAGAGTCAG CACTCTTGAG CCGACTATGG AAGCACACAG TCAAAATGAC
GAACAATTGC CACCACTGCA AAACAACGTT GAACTGTTGG ATCTCACACA ACTGCCGATA
CTAGGGGAAT ACCGTTAA
|
|---|
| Protein sequence | MTDDEFDYWC KQQQLTASCK DLIAAIRAAP PSRRVQGRAK NVSGVYPSRK MGQTIQFESH
TVELWAIYQM EHDPQVLEYY DQPPPFKIQY QNQNGRKIGH YHTPDFFVLR SSGAAWEEWK
TETELKRLAQ KYPSRYQKTE TGHWHCPPGE AYAASFGLKY HVRTDTELNP IFTQNLMFLE
DYFRFSANIP HSITEQISSA VQATPGTTIA TTLATIPGVR ANDIYAMIAT EQLYVDLYAV
PLVEHWRVQL WADQQTHTAH THLAIGTTGH HQQIISPTTL LPNTLLVWDA QLWTLVNLGE
KTTTLLPEVG QPMQLPTAFF LQLFDSGTIK IHTSETHTTI NEKVRELMDA ASPTDLERAN
HRFHLVQAYF QHRTDIYKDI PQSTLSRWVK QFREAEATFG CGYVGLLPRT ASRGNRLPKA
PTDASKLLDQ FITEHFETPR QAPAASVYRA YTRACCAANI PPLSQRTFYT RLKKRPIHEQ
TLKRQGAKAA YATEPIVLEL AKTTPRHGDR PFAICHLDHT QLDIELRSQV TGRNLGRPWL
TLLIDAYSRR ILAVYLTFDP PSYRSCMMAL RLCVQREGRF PQSVVVDGGK EFHSVYFDTL
LARYHCIKKT RPGGKPRFGS VVERLFGTTN TEFIFNLLGN TQASKQPRQL TSSVDPKQLA
VWTLADLYTY LCEWAYTIYD TSIHDSLGET PLQVYTDAIA ATGEREHRRI AYNEDFLMAT
RPSTPKGNAK VQPGQGIKVN YLYYWNDAFR NPVVEKTKVS VRYDPFDMGV AYAYLEGRWV
KCISQYYSTF AGRTEKEVLL AAQEIRQQDK RNAVSTNISA KRLADFIAAV QEHETLLMQR
LRDLEAVGVL ENVTPNTEGV SQFPRVSTLE PTMEAHSQND EQLPPLQNNV ELLDLTQLPI
LGEYR
|
|---|
| |