| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_C0102 |
|---|
| Symbol | |
|---|
| ID | 3678057 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007412 |
|---|
| Strand | - |
|---|
| Start bp | 124255 |
|---|
| End bp | 125811 |
|---|
| Gene Length | 1557 bp |
|---|
| Protein Length | 518 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637715186 |
|---|
| Product | glucose-methanol-choline oxidoreductase |
|---|
| Protein accession | YP_320380 |
|---|
| Protein GI | 75812763 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAACTA CATACCATCA CAGTGCTGCT TTTGATTATA TTGTGATTGG CGCCGGTTCA
GCAGGCTGCG TTGTTGCCAA CCGTCTTACA GAAGACCCTA ATACTAAAGT ATTGCTGCTC
GAAGCGGGTG ATCCTGATAC CAAGCCAGAA CTTCAAGTTC CCTCATTGTG GCCTACTACA
CTCTTAGGCT CGGAAGTGGA CTGGGCATAC TTAACTGAAG GGGAACCTTA CTTAAATAAC
CGCAAAATTT TATCTTCACG CGGTAAAGTC TTGGGCGGCA GCAGTTCGAT TAATGGCATG
ATTTATATAC GAGGCAATGA ACGTGACTAC AATAGCTGGC AAGCGTTAGG TAATATTGGT
TGGAGTTATC AGGATGTCTT GCCTTACTTC AAGAAATCGG AAAACCAGCA GCGGGGAGCA
TCGTTATTTC ACGGGGTTGA TGGACCACTT AGTATCACAG ATCCACTTTC TCCTGCAAAA
GTGTCGCAAC GCTTTGTGGA AGCCGCGATC GCACAGGGCT ATGAGCAAAA TCCCGACTTT
AATGGCGTAC AGCAGGAAGG TGCAGGACTT TACCAAGTGA CCGTGAAAGA TGGCAAGCGC
CAAAGTACAG CAGTGGCATT TCTGCGTCCG ATTAAAGATC GCCCCAACTT GACCATTCAA
ACAGGAGCAT TGGTGACTCG TTTACTCTTT GAGGGAAAGC GTGCAGTAGG GGTAGTGTAT
GTTCAAAATG GAACGGAGTA TCAAATCAGG GTCAACTCCG AAGTGATTTT GAGTGCTGGC
GCCTTCGATT CTCCTAAACT GCTCATGCTT TCTGGAATTG GACCTGCTGA ACATCTGCGG
GCAGTAGGCA TTCCTGTAGT TTTTGATTTG CCGGGTGTCG GCCAGAATCT TCAAGATCAC
CCACTTGCTG TTATTGCCTA CCAGTCTACT CAGGACGTAC CCCTTGCGCC AAGTAGTAAT
GGGGGAGAGG CTGGGTTATT TCTGCATACC AACAATAATT TAGATGCGGC ACCTAATTTG
CAATTTACAA TTGTTCCGAT TTTATATGTC GATCCTGCCT ATGCACGTGA AGGTCCGGGA
TTCACCCTTA CCTTTTACAT CACCCGTCCC GAAAGTCGTG GTAGTGTAAG ACTACGTTCC
TCCTCCCCCT TCGACCCACC GTTGATTCGC GTCAACTATC TTCAGAAAGA ATCTGACATG
CAACTGATGG TTGAAGGACT TAAAATTTTG CGTCAAATTG TGTACTCCGA TGCGTTTAAT
GAGTTTCGGG GTGAGGAAAT TGCTCCAGGG AGTTCCGTGC ATAGCGACAA AGCAATCGAA
GATTATATTC GGCAAACGTG CGGTACGGGA TGGCATCCTG TTGGGACGTG CAAAATGGGT
ATTGATCAAA TGGCGGTTGT CGATCCTCAA CTCAAGGTAC GGGGGATTGA AGGGTTACGA
GTTGTTGATG CATCGATTAT GCCAACTATG ATCACAGGAA ACACAAATGC ATCGGCAATT
ATGATTGGAG AAAAGGCTGC CGATTTGATA AAAGTTGGAA CAAAATTGCC TCAATGA
|
|---|
| Protein sequence | MTTTYHHSAA FDYIVIGAGS AGCVVANRLT EDPNTKVLLL EAGDPDTKPE LQVPSLWPTT
LLGSEVDWAY LTEGEPYLNN RKILSSRGKV LGGSSSINGM IYIRGNERDY NSWQALGNIG
WSYQDVLPYF KKSENQQRGA SLFHGVDGPL SITDPLSPAK VSQRFVEAAI AQGYEQNPDF
NGVQQEGAGL YQVTVKDGKR QSTAVAFLRP IKDRPNLTIQ TGALVTRLLF EGKRAVGVVY
VQNGTEYQIR VNSEVILSAG AFDSPKLLML SGIGPAEHLR AVGIPVVFDL PGVGQNLQDH
PLAVIAYQST QDVPLAPSSN GGEAGLFLHT NNNLDAAPNL QFTIVPILYV DPAYAREGPG
FTLTFYITRP ESRGSVRLRS SSPFDPPLIR VNYLQKESDM QLMVEGLKIL RQIVYSDAFN
EFRGEEIAPG SSVHSDKAIE DYIRQTCGTG WHPVGTCKMG IDQMAVVDPQ LKVRGIEGLR
VVDASIMPTM ITGNTNASAI MIGEKAADLI KVGTKLPQ
|
|---|
| |