| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_C0071 |
|---|
| Symbol | |
|---|
| ID | 3677810 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007412 |
|---|
| Strand | - |
|---|
| Start bp | 99406 |
|---|
| End bp | 100593 |
|---|
| Gene Length | 1188 bp |
|---|
| Protein Length | 395 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637715155 |
|---|
| Product | IS891/IS1136/IS1341 transposase |
|---|
| Protein accession | YP_320349 |
|---|
| Protein GI | 75812732 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0675] Transposase and inactivated derivatives |
|---|
| TIGRFAM ID | [TIGR01766] transposase, IS605 OrfB family, central region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.681722 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAAAG CCTACCGCTA CCGTTTTTAC CCAACTATCG AGCAAGAATC CCTCTTGCGT
CGGACAATTG GTTGTGTGCG GTTGGTGTTT AATCGAGCCT TGGCTGCGAG AACCGAGGCT
TGGTATGAAA GGCAAGAACG AGTTGATTAC GTTCAAACCT CTGCAATGCT GACGCAGTGG
AAAAAACTTG ATGATCTCCA ATTTTTAAAT GAGGTTAGCT GTGTACCACT GCAACAAGGA
TTGAGGCATC TGCAAACGGC TTTTAGTAAC TTCTTTGCGG GTAGAGCAAG ATACCCTAAC
TTCAAAAAGA AGCGTAGTGG AGGTAGCGCA GAGTTTACCA AGTCTGCCTT CAAGTGGAAG
GATGGGCAAG TCTACTTGGC AAAGTGTTCT CAACCTTTGC CAATTAAATG GTCTAGGCAA
CTGCCAAAGG ATTGTAAACC CACAACCATC ACGGTTAAAC TTGACCCCTC TGGACGCTGG
TTTGTTAGCT TGCAGATTGA CGATTCAACT GATGAAACCA TGCAGCCAGT TGATAGTGCC
GTAGGCTTGG ATGTTGGGGT TAGTTCTCTT GTTACTTTGA GTACGGGTGA AAAGATTGCT
AACCCCAAGG CGTTTGACAA GCACTACCAA AAGCTGAGGA GAGCGCAGAA AGCTTTGAGT
CGCAAACAGA AAGCCTCTCG CAACAGAGAT AAAGCTAGAC TCAAAGTTGC TCGGATTCAA
GCTAAGATTT CTGATTCTAG AAAAGACCAT CTGCACAAAC TGACAACTCG ACTGATTCGT
GAAAACCAAA CGATAGTAGT TGAGGATTTG GCAGTTAAGA ACATGGTCAA AAATCCCAAA
CTTGCCCGTG CCATCAATGA TGCTGCATGG GGTGAGTTAG TGAGACAACT GGAATATAAA
GCCAAGTGGT ATGGTCGAGC CTTGGTAAAA ATTGACCGAT GGTTTCCTAG CTCTAAACGC
TGTGGACATT GCGGTCACGT TGTTGAAAAG CTGCCGTTGA GTGTCAGAGA GTGGGATTGT
CCCAACTGCG GAACACACCA CGACCGGGAT ATCAACGCTA GTCGTAATAT TTTGGCGGTG
GGACACACCG TTACAGTCTG TGGAGCGAAC GTAAGACCTG ATAGGCATAT GTCTAAAGGG
CAGTTGCAAA AATCCAGCAA TGGAAGGAAA CAGAAACCTA AATCGTGA
|
|---|
| Protein sequence | MEKAYRYRFY PTIEQESLLR RTIGCVRLVF NRALAARTEA WYERQERVDY VQTSAMLTQW
KKLDDLQFLN EVSCVPLQQG LRHLQTAFSN FFAGRARYPN FKKKRSGGSA EFTKSAFKWK
DGQVYLAKCS QPLPIKWSRQ LPKDCKPTTI TVKLDPSGRW FVSLQIDDST DETMQPVDSA
VGLDVGVSSL VTLSTGEKIA NPKAFDKHYQ KLRRAQKALS RKQKASRNRD KARLKVARIQ
AKISDSRKDH LHKLTTRLIR ENQTIVVEDL AVKNMVKNPK LARAINDAAW GELVRQLEYK
AKWYGRALVK IDRWFPSSKR CGHCGHVVEK LPLSVREWDC PNCGTHHDRD INASRNILAV
GHTVTVCGAN VRPDRHMSKG QLQKSSNGRK QKPKS
|
|---|
| |