| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_C0022 |
|---|
| Symbol | |
|---|
| ID | 3677787 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007412 |
|---|
| Strand | - |
|---|
| Start bp | 38644 |
|---|
| End bp | 39768 |
|---|
| Gene Length | 1125 bp |
|---|
| Protein Length | 374 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 637715106 |
|---|
| Product | IS891/IS1136/IS1341 transposase |
|---|
| Protein accession | YP_320300 |
|---|
| Protein GI | 75812683 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0675] Transposase and inactivated derivatives |
|---|
| TIGRFAM ID | [TIGR01766] transposase, IS605 OrfB family, central region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0682422 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGACAC TGAAGTTTAA GCTATATCAA CACAAAAGAA ATAGACACCT TAAGCGCATT
ATTAATGCGG CTGGGGTAAT CTACAATCAT TGCATTGCTC TACACAAACG CTACTACAGA
ATGTGGGGCA ATCACTTGAG TTGTGCAAAA CTTCAGTCTC ATATTGCCAA ATTAAGAAAA
CGTAATTTAT TCTGGCAATC GCTAGGTTCT CAAGCAGTAC AAGATATCTG TCAACGCATA
GAGAAAGCCT ATCAACTATT TTTTAAACAC AATAAAAAAG GAGTTAGACC ACCAGGATTT
AAAAAGGTTA AAAAATACAA ATCATTCACT CTCAAACAAG CTGGTTATAA GTTTTTAGGT
AGCAACAGGG TGAAAATTGG GCATCGAGTA TATCAATTTT GGAAGTCTAG AGACATTGAG
GGAACAGTTA AAACCTTAAC CATTAAACGC ACACCATTAG GTGAATTGTT TATGGTTGTA
GTGGTTGATA ATGTTAGTCA AGCAGAAATT GAAGTTAAGA CGGGTAAAAT CGCTGGCTTT
GATTTTGGGT TGAAAACATT CCTCACTTGC TCAGACGGTA CTAAAATTGA ATCACCCCAA
TTTTTCAAGC AGTCACTCAA CGCCATCAAA AAAGCCAGCA GACAGCATTC CAAAAAACTA
AAGAGTTCAT CCAACAGGGA GCGAGCTAGG AAAAATTTGG TACGCAAATA TGAAGATATT
TCTCATCGTC GGCGTGATTG GTTTTGGAAA TTGGCCCATG AACTAACAGA TAAGTTTGAT
ATACTGTGTT TTGAGACGCT GAACCTCAAG GGAATGCAAC GACTTTGGGG AAGAAAAATA
TCAGATTTGG CGTTTGGCGA GTTCCTACAA ATTTTAAAAT GGATTGCTAA AAAGAAGAAT
AAACTGGTTG TTTTCATCGA CCAGTGGTAT CCATCCACTA AGACTTGCTC TGGCTGTGGA
CACGTTCTAG AAGAGTTGGA TTTATCTATT AGAGAATGGC GTTGCCCATC TTGCCAATCA
GTAAATGGAA GGGATGAAAA CGCATCTAAA GTAATTTGTG CAGTCGGGGC ATCGACTGTT
GGGTTAGGGG ATGTAAGTCG GTATGAAACT GCTATCGCTG TTTGA
|
|---|
| Protein sequence | MKTLKFKLYQ HKRNRHLKRI INAAGVIYNH CIALHKRYYR MWGNHLSCAK LQSHIAKLRK
RNLFWQSLGS QAVQDICQRI EKAYQLFFKH NKKGVRPPGF KKVKKYKSFT LKQAGYKFLG
SNRVKIGHRV YQFWKSRDIE GTVKTLTIKR TPLGELFMVV VVDNVSQAEI EVKTGKIAGF
DFGLKTFLTC SDGTKIESPQ FFKQSLNAIK KASRQHSKKL KSSSNRERAR KNLVRKYEDI
SHRRRDWFWK LAHELTDKFD ILCFETLNLK GMQRLWGRKI SDLAFGEFLQ ILKWIAKKKN
KLVVFIDQWY PSTKTCSGCG HVLEELDLSI REWRCPSCQS VNGRDENASK VICAVGASTV
GLGDVSRYET AIAV
|
|---|
| |