Gene Ava_C0001 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_C0001 
Symbol 
ID3677793 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007412 
Strand
Start bp399 
End bp1703 
Gene Length1305 bp 
Protein Length434 aa 
Translation table11 
GC content44% 
IMG OID637715085 
Productmajor facilitator transporter 
Protein accessionYP_320279 
Protein GI75812662 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value0.51078 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00413697 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCCACAAT TTGCTGTAGC CCAAAGCATG AGAGTTTTTA CTTTCATTTG GTTTGGACAA 
CTAGTTTCAC TGCTGGGTTC GAGTCTCACA GGGTTTGCAC TAGGAGTTTG GGTTTATCAA
AGAACTGGAT CAGTTACACA GTATGCACTC ATTTCTTTAT TCTCACTACT ACCAGGTCTT
TTAATAGCAC CATTAGCAGG CGTGTTAGTA GACAGATGGG ATCGACGCTG GCTGATGATT
TTTAGTGATG CTGGAGCAGG TTTAGGTAGT CTGATAATTG CCCTGTTGCT GTGGCTGGGT
CAACTCCAAG TTTGGCAAAT TTACCTTATT GTTGCCATCA GTTCAATGTT CAGTGCCTTC
CAGTGGCCTG CTTATGCTGC TGTCACAACA TTACTCGTTC CTAAACAGCA CTTAGGGCGT
GCTAATGGAA TGGTACAGTT TGCAGAAGCA GTATCACGGT TAATTGCACC AGCCTTAGCA
GGAATACTAG TAGTCTCAAT CAATCTTCAA GGTGTCATAT TACTAGATAG TGTGACGTTT
GTTTTGGCGA TCGCCACGCA GATGCTCGTT CGATTCCCTA AGATCAAAAC TACGATCGCA
GATGTAGAGA AAAACAAATC CCTGCTAGGG GAGGCGGTGT CTGGCTGGAA ATACATCACT
ACTCGACCCG GACTACTGGC ATTATTGATA TTTTTTGCTA TCAAAAATTT TTTGGTAGGA
ACTGTTAACG TACTGATTAC ACCTTTAGTT CTATCTTTTA CTTCCACTAC TGTCTTAGGC
ACTGTACTAT CAATTGGTGG CAGTGGTATG CTCCTTGGCA GTTGTGTTAT GAGCTTTTGG
GGTGGTTCAC GGCGACGTAT TCATGCTGTA CTGGGCTTTA CCCTGTTGGG TGGGTTATCT
ATTATCATGG CTGGAATCAA ACCAGCAGCA CCAGTTTTCT TTGCAGCTGC GTTTACCTAC
TTCTTCGGCT TCCCCATTGT CAACAGTTGC GATCAAGCTA TTTGGCAAAG CAAAGTTGAG
CTTGCTGTCC AGGGACGAGT TTTTGCTTTG CGACGTATGC TTACTTGGGG ATCTCTACCG
CTTGCTAGCC TTGTGGCAGG CCCCTTAGCC GATCATGTCT TTGAACCTTT ACTTGTTCCA
GGAGGGTTAT TAGCCGGAAA CCTTGGACAG ATTATTGGTG TAGGGAAAGG ATACGGCATT
GCCCTATTAT TTATTCTTAT GGGAATACTG ACTATGTTAG CCACAGTAAG CTTCTATTTA
TACCAGCCTC TACGTTTATT AGAAACTCAA TTGCCTGATG CGTAA
 
Protein sequence
MPQFAVAQSM RVFTFIWFGQ LVSLLGSSLT GFALGVWVYQ RTGSVTQYAL ISLFSLLPGL 
LIAPLAGVLV DRWDRRWLMI FSDAGAGLGS LIIALLLWLG QLQVWQIYLI VAISSMFSAF
QWPAYAAVTT LLVPKQHLGR ANGMVQFAEA VSRLIAPALA GILVVSINLQ GVILLDSVTF
VLAIATQMLV RFPKIKTTIA DVEKNKSLLG EAVSGWKYIT TRPGLLALLI FFAIKNFLVG
TVNVLITPLV LSFTSTTVLG TVLSIGGSGM LLGSCVMSFW GGSRRRIHAV LGFTLLGGLS
IIMAGIKPAA PVFFAAAFTY FFGFPIVNSC DQAIWQSKVE LAVQGRVFAL RRMLTWGSLP
LASLVAGPLA DHVFEPLLVP GGLLAGNLGQ IIGVGKGYGI ALLFILMGIL TMLATVSFYL
YQPLRLLETQ LPDA