Gene Ava_B0243 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_B0243 
Symbol 
ID3677610 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007410 
Strand
Start bp274535 
End bp276784 
Gene Length2250 bp 
Protein Length749 aa 
Translation table11 
GC content49% 
IMG OID637714949 
Producthelicase RecD/TraA 
Protein accessionYP_320143 
Protein GI75812524 
COG category[L] Replication, recombination and repair 
COG ID[COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member 
TIGRFAM ID[TIGR01448] helicase, putative, RecD/TraA family 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0357399 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCAACTC TACCAACAGC ACAACAAACC GAAGCACAAC CCCACTACGA AATCATCACC 
GGAGTAGTCG AGCGCCTAAC GTTCCACTCA GAGGAATCCG GGTATACAGT CGCACGTCTA
ACCCGCTCCC GCAGTACCGA CCTCACCACC ATCGTCGGCA GCTTCGCTAA CATCCAGCCT
GGGCAAACGC TACAGCTAAC AGGCTTCTGG AAAGACCATC CGCAGTACGG GCCACAATTC
AATGTCACTA ACTACCACGA AACCAAACCC GCTACCCTCA CCGGAATCGA GAAATACCTG
GGTAGCGGAC TAATCAAAGG AGTCGGGCCG GTCACAGCAA GGCGCATTGT TGCACATTTC
GGGTTAGAAA CACTCGACAT CATTGAGAAC CAAATTGACC GCCTAATTGA AGTACAAGGT
ATCGCCAAGA AACGCATCAA GCTCATCAAG AACGCCTGGG AAACGCAAAA GGCAATCAAA
GAGGTGATGG TGTTCTTGCA AACCCACGGC GTTTCTACAA CATACGCCGT AAAAATATAT
AAACAATACC AAGATAAAGC GATCGCCACC GTCACTGCGA ACCCGTACCA GCTTGCGACC
GACATCTACG GTATTGGCTT CTTGACCGCC GACAAGATTG CGCGAAATCT TGGTGTACCC
TCAAGCTCAG AATTTCGTTA CAGCGCTGGC ATTATCCACG CATTGAGTGA AGCAGCCGAA
GATGGTCATT GTTATCTCCC CCAGCCGGAA CTCATCGAGA AAGTTATCAA GCTACTAACA
ACCGATGACC ATCAGCCAAC AAATGAAGCG ATCGCGGACA TCATCAAAGA TATGTCAGCC
AAGGAAGAAC TCATCCGGGA ATATGTTAGA GACAGCTACG GAGAAAAGTT ATTGCTGTGC
TATAAGCCGA GCTTCTTCCA CACCGAGCAG AATTTAGCAC AGTTGATATC TCGACGGTTA
CGCCAACAAG TTAAACAAGA TATTCCCCGC GTCCGTGCTT GGCTAGAGCG ATTCATGTCC
AGCCGCAAAA TTCAGCTATC ACCCCAACAG CAGCAAGCGG TAGAGAAGGC AGCTTACTCT
CCGGTAATGG TTCTTACTGG TGGGCCAGGG GTGGGGAAAA CCTTCACGAC ACACACCATA
GTTTCATTGT GGAAAGCGAT GGGAAAAAAC ATTGCCCTAG CTGCACCAAC AGGAAGGGCC
GCACAGCGAT TATCCGAGAT GACTGGGCTG GAAGCTAAGA CCATTCACCG CTTGCTGGAA
TTTGACCCGA AAACAATGGG TTTCAAACGG GATAACGAAA ATCCCCTGCC CTTCAGTGCC
ATTATTGCCG ATGAGGCTTC GATGTTAGAC CTATTTCTGG CACATTCGCT CTTTAAAGCG
GTAGCTAATG GAGCGCAACT ATTATTAGTG GGTGATATTG ACCAATTACC ATCAGTAGGC
CCTGGTAAAG TGCTGGCAGA CCTAATCACT TCACTACAAG TACCAGTGGT GAAGCTAACG
CAAGTATTTC GCCAAGCCCA GCAAAGCGCA ATTGTGACGG CAGCGCACCA AATCAACCAG
GGGGATTACC CAAAGATTGA ACCAATCAGC GATAATCCGC AGTCGGACTG CTTGTGGCAT
GGTGGTGGCC ACAGCCCTGA ACACGGAGTC CAAGCAATCT GTGAATTGGT AGGCGAGTTT
ATCCCACGGC TGGGTTTTAA TCCAGGCACG GATGTACAGG TGTTGTCTCC AATGTCGCGG
GGGTTAGTCG GGACTAGAAA TTTGAATGCC GTTTTGCAGC AGCTGATCAA TCCGCCTGCA
TCGGGGAAAG TCGAGATTAG CCGGGGTGGG ATGATTCTGC GCGAGGGCGA TCGCGTTATA
CAACAGATGA ATGATTATGA CCGCGAGGTC TTTAACGGGG ATTTGGGGAC TATTTTAAAT
ATTGATACGG AGGAGCAAGA GGTTACGGTT GAGTATGGTG GTCGGGCTGT GGTGTATGAT
TATGCGGATC TCAATGAGAT AACTTTGGCA TTTGCGATTT CATGTCATAA AAGCCAGGGC
GGAGAGTTTC CAGTTGTAAT ATTTCCACTT TTCATGCAAC ATTATGTCAT GCTTTCGCGG
AATTTGTTTT ATACAGGTCT GACCAGGGCA AGGAAGTTAG CGATTGTGGT TGGTTCCAAG
AAGGCGATCA CCTTGGCAGT CAGAACTACG AATGATCAGC AGCGCTACAC TCGGTTGTGG
CAGAGGTTGT TGCAGCCGAT GGCTTTGTAG
 
Protein sequence
MSTLPTAQQT EAQPHYEIIT GVVERLTFHS EESGYTVARL TRSRSTDLTT IVGSFANIQP 
GQTLQLTGFW KDHPQYGPQF NVTNYHETKP ATLTGIEKYL GSGLIKGVGP VTARRIVAHF
GLETLDIIEN QIDRLIEVQG IAKKRIKLIK NAWETQKAIK EVMVFLQTHG VSTTYAVKIY
KQYQDKAIAT VTANPYQLAT DIYGIGFLTA DKIARNLGVP SSSEFRYSAG IIHALSEAAE
DGHCYLPQPE LIEKVIKLLT TDDHQPTNEA IADIIKDMSA KEELIREYVR DSYGEKLLLC
YKPSFFHTEQ NLAQLISRRL RQQVKQDIPR VRAWLERFMS SRKIQLSPQQ QQAVEKAAYS
PVMVLTGGPG VGKTFTTHTI VSLWKAMGKN IALAAPTGRA AQRLSEMTGL EAKTIHRLLE
FDPKTMGFKR DNENPLPFSA IIADEASMLD LFLAHSLFKA VANGAQLLLV GDIDQLPSVG
PGKVLADLIT SLQVPVVKLT QVFRQAQQSA IVTAAHQINQ GDYPKIEPIS DNPQSDCLWH
GGGHSPEHGV QAICELVGEF IPRLGFNPGT DVQVLSPMSR GLVGTRNLNA VLQQLINPPA
SGKVEISRGG MILREGDRVI QQMNDYDREV FNGDLGTILN IDTEEQEVTV EYGGRAVVYD
YADLNEITLA FAISCHKSQG GEFPVVIFPL FMQHYVMLSR NLFYTGLTRA RKLAIVVGSK
KAITLAVRTT NDQQRYTRLW QRLLQPMAL