Gene Ava_B0237 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_B0237 
Symbol 
ID3677705 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007410 
Strand
Start bp264362 
End bp266509 
Gene Length2148 bp 
Protein Length715 aa 
Translation table11 
GC content43% 
IMG OID637714943 
Productbacteriocin-processing peptidase 
Protein accessionYP_320137 
Protein GI75812518 
COG category[V] Defense mechanisms 
COG ID[COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.821835 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATAAAAT ACCCCGTCGT CCTACAACAC AACGAAGAAG ACTGTGGCCC CGCCTGTCTA 
GCCACCATCT GCAAATACTA CGGACGGCTA TTCACCATCA ACCGCACCCG TGAAGCCGCA
GGAACAGGAC AATTAGGAAC AACTTTACTC AACCTCAAAC AAGGGGCGCA AGTTTTAGGC
TTCAATGCGC GGGGAGTGAA AGCTGTTATC GACTTAGTAG ATAAGCAACA GATACCTCTC
CCAGCCATCA TTCACTGGAA AGGTAATCAC TGGACTGTAT TATATGGACG CAGAGGTAAA
CAATATATCG TCGCTGATCC CTTGGTGGGT GTGCGTTATT TAACCAAAGA AGCACTGTTA
ACTGGTTGGA CTAACGGCGT AATGCTGCTA CTAGAACCCC GTCCCGATTT CCTTTCTCAA
GCAGATGATC AAGATAAAGT CGGCGGGTGG AAACGCTTAG GGCAACGTCT ATTTAGTTAC
CGTCATATCT TAGCAGAAGC CTTACTACTT AACTTTGTCG TCGGCTTATT AGCCTTACTT
TCGCCATTTC TCATCCAAAT TCTCACAGAT GATGTTTTGG TGAGGGGAGA CACCCAATTA
CTCACGGGTA TAGCCTTGGG AGTCTTAGCG ATGAGTTTAA TTAGTAGTGC TTTGCAATGG
GTACAAGGAA ACTTAGTAGC ACACTTTGCC CATCGTTTAG AATTAGATTT AGTCTTAGAA
TTTGGCAGAA TCATTTTACG TTTGCCTTTG TCCTATTATG AATCTCGCCG TAGTGGTGAA
GTGGTGAGTC GGTTACGGGA TATTCAAACC ATTAATCAAT TAGTTTCGCA AGTGGGTGTG
ACTTTACCCA GTCAATTATT AATTGCGATC GCTTCTTTAG CTTTGATGCT ATTTTATAGC
CCTAAACTCA CCCTCGCCTC ATTATTCATC GCTTTATTCA TGCCCCTATC CACAGTGGTT
TTCTTCCCCA GTCTGCAACA GAAAATCCGC AATGTTCTAG GAATAGCTGC CGAAAATCAA
GGTATTTTAG TGGAAACCTT CAAAGGTGCA TTAGTTGTCA AAACTACCAA TGCAGCCCCG
GAATTTTGGC AAGAATTTCA AACTCGCTAC GGTAGACAAG CTAACTTCAT GTTTCGTACC
GTGCAGATTG TCATTACTAA TAATATTTTT TCTGGTTGGG TAGCCACATC GGGAGGGATA
ATTTTGCTGT GGTTCGGCAG TACATTGGTA ATTAATCGAG AAATCACAAT AGGGCAACTA
TTAGCTTTTA ATAGTTTAAA TACTCAGATT ATTGCCTTAG TCAATACAGT CGTTGGTTTT
GTCACCGAAT TTACCCGCGC CCAAGCCGCT ACAGAACGTT TAAATGAAGT TATTCAATCT
ACCCCAGAAT TTCCTGAAGT CAATCACAAA CCCTTTGTCA ACATTCCCGA CAATGCAGAG
ATTATTTGCA GTTATCTCAA TTTTCACCAT CCTGGGAGAG TAGATTTATT ACAAGATTTC
TCCTTGACTC TCCCAGGGGG AAAAGTGATA GCCATTATTG GACAATCAGG GTGTGGTAAA
AGTACCCTCA CTAAACTCCT AGCTGGGTTG TACACTCCCC AATCAGGGAA TATTCGCATC
CACCGCTACA ACCTCCAAGA TTTATCACCC GATTGCTTGC GTCAACAAGT AATTTTAGTT
CCTCAAGAAG CTCATTTTTG GAGTCGTTCA ATTTTAGATA ATTTGCGTCT TGGTAATCCC
CAAGTTAACT TTGAACAAGT CGTGACAGCT TGTCAGGTAG CAGGTGCAGA CACATTTATC
AGTAAATTGC CGGAGAAATA TCAAACTATC TTAGGTGAAT TTGGGGCTAA TCTTTCCGGC
GGACAAAGAC AAAGATTAGC CATAGCCAGA GGGATAGTCA CCCATCCACC AATTTTGATT
TTAGATGAAT CCACTGCTGG ACTAGATCCC AAAACCGAAA GTGTAATTTT AGACCAGTTA
CTAGCCTATC GCCAAGGGAA AACCACAATC CTGATTAGTC ATCGTCCCCA CGTCATTAAA
CGTGCCGACT GGATTGTACT CTTAGAAGCC GGACAACTCC AACTCCAAGG CACTCTCTCC
GAACTACTCA ACATCCCTGG TGAACACCTA GATTACCTCA TCTCTTGA
 
Protein sequence
MIKYPVVLQH NEEDCGPACL ATICKYYGRL FTINRTREAA GTGQLGTTLL NLKQGAQVLG 
FNARGVKAVI DLVDKQQIPL PAIIHWKGNH WTVLYGRRGK QYIVADPLVG VRYLTKEALL
TGWTNGVMLL LEPRPDFLSQ ADDQDKVGGW KRLGQRLFSY RHILAEALLL NFVVGLLALL
SPFLIQILTD DVLVRGDTQL LTGIALGVLA MSLISSALQW VQGNLVAHFA HRLELDLVLE
FGRIILRLPL SYYESRRSGE VVSRLRDIQT INQLVSQVGV TLPSQLLIAI ASLALMLFYS
PKLTLASLFI ALFMPLSTVV FFPSLQQKIR NVLGIAAENQ GILVETFKGA LVVKTTNAAP
EFWQEFQTRY GRQANFMFRT VQIVITNNIF SGWVATSGGI ILLWFGSTLV INREITIGQL
LAFNSLNTQI IALVNTVVGF VTEFTRAQAA TERLNEVIQS TPEFPEVNHK PFVNIPDNAE
IICSYLNFHH PGRVDLLQDF SLTLPGGKVI AIIGQSGCGK STLTKLLAGL YTPQSGNIRI
HRYNLQDLSP DCLRQQVILV PQEAHFWSRS ILDNLRLGNP QVNFEQVVTA CQVAGADTFI
SKLPEKYQTI LGEFGANLSG GQRQRLAIAR GIVTHPPILI LDESTAGLDP KTESVILDQL
LAYRQGKTTI LISHRPHVIK RADWIVLLEA GQLQLQGTLS ELLNIPGEHL DYLIS