Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ava_B0053 |
Symbol | |
ID | 3677918 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Anabaena variabilis ATCC 29413 |
Kingdom | Bacteria |
Replicon accession | NC_007410 |
Strand | + |
Start bp | 65809 |
End bp | 66759 |
Gene Length | 951 bp |
Protein Length | 316 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 637714762 |
Product | sigma-28 |
Protein accession | YP_319956 |
Protein GI | 75812337 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family [TIGR02997] RNA polymerase sigma factor, cyanobacterial RpoD-like family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 34 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGTCCAGCC TAAGTTCTGA TTTGATACGC ATCTATTTGC AAGAAATTGG TCAGTTTCCT TTGTTAACTT CTGATCAGGA AATAACTTAT GGCAGGCAAG TACAGCAAAT GATTGCCATC CAAGAGCAAC AGCAGCAGCT TAGTCAACAA TTACATCGAG AACCAACAAC GGCAGAATTA GCGAATTTCC TCAACACAAC CCAAGCCCAA GTCAATCAAA TACTTGAGCT TGGTCAACGA GCCAAGCAAA AGATGATCAC CGCAAATTTG AGGCTGGTAG TTTCTATCGC CAAAAAATAT CAGCGCCGTA ACTTAGAGTT CTTAGATTTA GTTCAAGAAG GTGCGATTGG CTTGCAAAGG GGGATAGAAA AGTTTGACCC TAATCGTGGT TACAAGTTGT CAACCTACGC ATATTGGTGG GTAACGCAAG CAATTACCAG AGCGATCGCC GAAAAATCTC GCACAGTCAG GCTACCGATT CACGTTAACG AAAAACTCAA TCAAATTAAG AAGGTACAGC GAGAATTTTT TCAAACGCTA GGTCGCCGTC CTAGTGTGGC AGAAATTGCC CAAAAATTAG AGTTAGAACC CAGCCAAATT CGAGAATACC TCAAGGTTGC CAGTGGGACG ATTTCTCTAG ATTTAAAGGT AGGGGATAAC CAGGAAACAG AATTGAGCGA ACTTTTAGCC TCGGAGGGTG TTTCGCCAAA TGAAAATACT ACTCACGAAA TGTTGCGCCA AGACCTAAGT GATTTGTTAG CATCACTCAA ACCGATGCAA CGCGAAGTAT TAATTTTACG CTTTGGTTTG TTGGATAATC AAGAGCAAAG TTTAGCCCAA ATTAGCGAAA AGCTAAATCT TAGCCGAGAG CGAGTGCGCC AAATCCAGCA AAAAGCAATG ACTGCTCTGC GTCGTCAACA GCCATCGATT GGGCAGTATC TCACTTCTTG A
|
Protein sequence | MSSLSSDLIR IYLQEIGQFP LLTSDQEITY GRQVQQMIAI QEQQQQLSQQ LHREPTTAEL ANFLNTTQAQ VNQILELGQR AKQKMITANL RLVVSIAKKY QRRNLEFLDL VQEGAIGLQR GIEKFDPNRG YKLSTYAYWW VTQAITRAIA EKSRTVRLPI HVNEKLNQIK KVQREFFQTL GRRPSVAEIA QKLELEPSQI REYLKVASGT ISLDLKVGDN QETELSELLA SEGVSPNENT THEMLRQDLS DLLASLKPMQ REVLILRFGL LDNQEQSLAQ ISEKLNLSRE RVRQIQQKAM TALRRQQPSI GQYLTS
|
| |