Gene Ava_B0009 details

Gene Information

• Locus tag: Ava_B0009
• ID: 3677723
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Anabaena variabilis ATCC 29413
• Kingdom: Bacteria
• Replicon accession: NC_007410
• Strand: -
• Start bp: 12448
• End bp: 14310
• Gene Length: 1863 bp
• Protein Length: 620 aa
• Translation table: 11
• GC content: 34%
• IMG OID: 637714718
• Product: TPR repeat-containing serine/threonin protein kinase
• Protein accession: YP_319912
• Protein GI: 75812293
• COG category: [K] Transcription; [L] Replication, recombination and repair; [N] Cell motility; [R] General function prediction only; [T] Signal transduction mechanisms; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0515] Serine/threonine protein kinase; [COG3063] Tfp pilus assembly protein PilF

Plasmid Coverage information

• Num covering plasmid clones: 28
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCAGTTT ATTGCATAAA CCCCCTATGT GAACAACGAA AAAATCCGGA CAATGCAGAA 
GTCTGTCTTG CCTGTGGGAC TCCACTTATA ATTAATAATC GCATCCGTCT ACTAAAACCA 
TTAAGAGAAT TAAGCTTCGA TCCCCAGAAC TACTTTGAGG TGTTTGAAGT GGAGGATAGG 
CGGACTCAAG AGTATCCTGT TCATCAACGG CGAGTGATGA AAGTTTTAAA ATGGAACTCT 
TCTAAATATA GAGAATTGAT TGAGCAAGAA TTTCTAACTT TACAGTTAAT TAAGTATCCA 
AACATACCTA AATGTAACAT AAATGATTTT TTTACATTCA CGCCGCATAA TAGTCCACTA 
GAGTTACGTT GTTTGTTGAT GGATAAAATT GAAGGCAAGA ATTTAGATGA TTGGATAAAG 
AGCCACGATA AGATTACACA AAATCTTGCT TGGGAATGGA CTAAACAATT AGTAGAAATT 
CTTGATGTAA TACATCATAA TGAGTTTTTT CATAGAGATA TAAAACCAGC TAACATCATT 
CTGCAACCAA ATGGACAATT AGCATTAGTT GATTTTGGGA CGGCTCGGCG AATTACAGAT 
ACTTACTTAG CGAAAATTAG TGCCAGTGGA GGAACAGATA CAACTATAGG GAACTACGAA 
GTTACAACTG TAATTTCGCC TTTATACAGT CCATTAGAAC AAATTAACGG TAGAGCAGTG 
CCTCAGTCGG ATTTTTATGC ACTAGGTCGA ACTATTGTCC GTTTGGTTAC TGGGGTGTCC 
TTGTTGCAAT TACCAACTGA TAAAAAAACG GGCAAACTAA TCTGGAGAAA TAAAGCGCCT 
CAAATTGATA AGCCTTTTGC TGATTTTTTG GATGAGTTAA TGTCACCTCT ACCGGGAAAA 
CGTCCACAAA GCACTAAAAT TATTTTAGAA AGATTAGAAA ATCTGCCTTG GCATTCTCAA 
GTTCATCGAA TAATTAGTTC ACATATATTT AAAATTAGTA TAGTTAGTAT ATTTTTATTA 
GTTAGTTTAG CCTCATACAT ATTTTTACAA CCTGTAATAG CAGAAAGTTT TTTAAACCAA 
GGAAAGAAAG CTTTAGAACA GAATCAGCTT GATGAGGCTC AAAACAAATT TCAGCAAGCA 
GTTAAAATAA AACCTGATAT AGCAAAACAA GTATCAAATT TTTATCTGGA GCAAGGGATT 
AGACGTGATA TTTCTCCCCA AAGAGCTAGA CAATATTATG AGTTATCTAT TAAATACAAT 
CCTCAGAATG GTAGCGCGTA TAATAATTTA GCGTTAATAT GTCAGCAACT ACAAGACATT 
GAATGTGTAA ATAACAGTTA TAAAGAGGTT TTTAAACTCA AACCGAATAA ATGGGAATCT 
CATTATGGAT TAGGTAGTTT CTATGACGAA TTGGGCAAAT ATGATTTAGC AGAACAACAA 
TATAATCTAG CTATAAAAAG TAGTGATCTA GCATTAGATG CTGTAAGTAA TTTAGCACGA 
ATAAAGGTTA TACAGGGACA ATATGAAGCT GCTATTAATA TAGCCAATAA GGGATTACAA 
AAAGCTGAAG AACCTGAATT AAAAGCAGCA CTATATAAAA CTATAGGTTG GGCGAAGTAT 
GAAGAAAAGA AGTATGCAGA AGCTGAAAAA AATTTAGAAA AAGCCCAAAG TTTAGATTTA 
CAAAGAGTAG ATACATACTG CCTGTTAGCC AAAACACAAG AGGCTCTAGG AAAGTTTGAA 
AGTGCTAGAG TTTGGTGGGA ACCATGTTTG CTAATAAGTA CAAATTTGCC TGAAGTAGTA 
CAGTGGCGAG TAGAAATATT GCAAAGAATC CAACTTCCAA GAAATTATGA GACTAAAAAA 
TAA 

 

Protein sequence

MSVYCINPLC EQRKNPDNAE VCLACGTPLI INNRIRLLKP LRELSFDPQN YFEVFEVEDR 
RTQEYPVHQR RVMKVLKWNS SKYRELIEQE FLTLQLIKYP NIPKCNINDF FTFTPHNSPL 
ELRCLLMDKI EGKNLDDWIK SHDKITQNLA WEWTKQLVEI LDVIHHNEFF HRDIKPANII 
LQPNGQLALV DFGTARRITD TYLAKISASG GTDTTIGNYE VTTVISPLYS PLEQINGRAV 
PQSDFYALGR TIVRLVTGVS LLQLPTDKKT GKLIWRNKAP QIDKPFADFL DELMSPLPGK 
RPQSTKIILE RLENLPWHSQ VHRIISSHIF KISIVSIFLL VSLASYIFLQ PVIAESFLNQ 
GKKALEQNQL DEAQNKFQQA VKIKPDIAKQ VSNFYLEQGI RRDISPQRAR QYYELSIKYN 
PQNGSAYNNL ALICQQLQDI ECVNNSYKEV FKLKPNKWES HYGLGSFYDE LGKYDLAEQQ 
YNLAIKSSDL ALDAVSNLAR IKVIQGQYEA AINIANKGLQ KAEEPELKAA LYKTIGWAKY 
EEKKYAEAEK NLEKAQSLDL QRVDTYCLLA KTQEALGKFE SARVWWEPCL LISTNLPEVV 
QWRVEILQRI QLPRNYETKK