Gene Nwi_3064 details

Gene Information

• Locus tag: Nwi_3064
• Symbol: def
• ID: 3674528
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nitrobacter winogradskyi Nb-255
• Kingdom: Bacteria
• Replicon accession: NC_007406
• Strand: +
• Start bp: 3330017
• End bp: 3330580
• Gene Length: 564 bp
• Protein Length: 187 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 637714629
• Product: peptide deformylase
• Protein accession: YP_319664
• Protein GI: 75677243
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0242] N-formylmethionyl-tRNA deformylase
• TIGRFAM ID: [TIGR00079] peptide deformylase

Plasmid Coverage information

• Num covering plasmid clones: 23
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 12
• Fosmid unclonability p-value: 0.518814
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

TTGACCCCGG CAGGCCCGGG GATTACATCG CCCTGCATGG CTATTCGCGA AATAATCATC 
CTTCCGGACA AGCAGTTGCG CCTCGTATCC AGGCCGATCG AGACGGTGAC GCCGGAGATC 
CGCAAGCTCG CCGACGACAT GTTCGAGACC ATGTACGACG CCCCCGGCAT CGGGCTGGCC 
GGCATCCAGA TCGCGCAGCC GTTGCGCATC GTCACCATGG ACCTCGCCAG ACGCGACGAG 
GAAGGTGAAC TGACGCCGCG GCCGAGGGTT TTCATCAATC CGGAAATCCT GTCGGCGTCG 
GAGGAACTCT CGGTCTACGA AGAAGGCTGC CTGTCGATCC CCGAATATTA CGAGGCGGTC 
GAGCGGCCCT CGCGGGTACG GATTCGCTTC ACCGACCTCG ACGGCAAGGT GCACGAGGAG 
GATGCCGAGG GCCTTTTCGC CACCTGCATC CAGCACGAGA TCGACCATCT CAACGGCGTG 
CTGTTTGTCG ATCACCTTTC GAAACTGAAG CGCGACCGCG TGATGAAGAA ATTCACCAAG 
GCCGCCAAGT TCGCCGCGAA ATAA 

 

Protein sequence

MTPAGPGITS PCMAIREIII LPDKQLRLVS RPIETVTPEI RKLADDMFET MYDAPGIGLA 
GIQIAQPLRI VTMDLARRDE EGELTPRPRV FINPEILSAS EELSVYEEGC LSIPEYYEAV 
ERPSRVRIRF TDLDGKVHEE DAEGLFATCI QHEIDHLNGV LFVDHLSKLK RDRVMKKFTK 
AAKFAAK