Gene Nwi_3055 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNwi_3055 
Symbol 
ID3674519 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrobacter winogradskyi Nb-255 
KingdomBacteria 
Replicon accessionNC_007406 
Strand
Start bp3317658 
End bp3320663 
Gene Length3006 bp 
Protein Length1001 aa 
Translation table11 
GC content67% 
IMG OID637714621 
Productbifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 
Protein accessionYP_319656 
Protein GI75677235 
COG category[C] Energy production and conversion
[E] Amino acid transport and metabolism 
COG ID[COG0506] Proline dehydrogenase
[COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase 
TIGRFAM ID[TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.554963 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0720353 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGCCCC AGCCTCCGCC ACCGTTCTCG GTCCCCTACG CTCCGGATGA CCGGACGATC 
GCGAAGCAGT TGCTCACCGG GGCGCGGCTG GCGCCTGAAC AGGAAACGCG GATCGATCAG
ACGGCGCGAC GCCTGATCGA CGCGATCAGG CAAAACGACG ACCCGCTGGG CGGCGTCGAG
GACATGCTGC GCGAATTTGC CCTCTCTACC AAAGAGGGGC TCGCACTGAT GGTGCTCGCC
GAGGCGCTGC TGCGGGTGCC CGATGCCGAG ACCGCGGACA GGTTCATCGA GGACCGGCTC
GGGCAGGGTG ACTTCATCCA CCACGAGACC CGATCCAGCG CCTTCCTCGT CAACGCATCC
GCCTGGGCGC TTGGATTGTC GGCGCGGGTC ATCCAGCCGG GCGAGACGCC GCAGGGAACC
ATCGGGCGGC TCGCCAAGCG GCTCGGCGTT CCGGCGATCC GCGCGGCGAC CCGGCAGGCG
ATGCGGCTGA TGGGAAGCCA CTTCGTACTG GGCGAGACCA TCGAGGCGGC GCTGGAGCGG
ACGCACACTC ATTCAGCGGG ATGTTCCCGC TACTCCTTCG ACATGCTCGG CGAGGGCGCG
CGCACGGCGG CGGATGCGGA CCGCTATTTC GATTCCTACG CCGCGGCCAT CGAGGCGATC
GGCCGCGGCG CCGGCGACAA TCCGCTGCCC GACCGCCCCG GCATTTCGGT CAAGCTGTCG
GCGCTACATC CGCGCTATGA GGCGGTCAGC CGGGGACGGG TGATGGCGGA GCTGGTGCCG
CGCGCCATCG ACCTCGCCAG GCGCGCCAGG GCGCTCGATC TCGCCTTCAC GGTCGATGCG
GAGGAAGCCG ACCGGCTGGA GCTTTCGCTC GACGTGGTGG CCGCTATTGC CGTCGACCGC
TCGCTTGCAG GATGGAGCGG CTTCGGCCTC GCCGTCCAGG CCTATCAGAA ACGCGCCGGC
GCGGTGATCG ACTATATCGA CGATCTCGCA CAAGCCCTGA ACCGGCGGAT GATGGTTCGC
CTCGTGAAGG GCGCATACTG GGACACCGAG ATCAAGCGCG CGCAGGAGCG CGGGCTCGAA
GGTTATCCCG TGTTCACCCG CAAGGCGATG ACGGACCTGA ATTACCTCGC CTGCGCACGA
AAACTGCTGG CGCTACGCCC GCGCCTCTTT CCGCAATTCG CGACCCACAA TGCCCTCACC
GTCGCGACGC TGCTCGAACT GACGGGTGGA GAAAGCGGAT TCGAATTCCA GCGCCTGCAC
GGCATGGGCG AAGCGCTCTA CGCCGCACTG TGCAAGGATC GTCACGCGAT CGCTTGCCGC
ATCTACGCGC CGGTCGGCAG TCACCGCGAC CTGCTCGCCT ATCTGGTGCG CCGCCTGATC
GAGAACGGAG CCAACTCCTC CTTCGTCGCC ACAGCCTCCG ATCCCGATGT GCCGCCGGAG
ACGCTGCTGC GCAGGCCGGC CGATATCATA GGAAGCGCCG ACAATGCCGG GCACGCCAGG
ATTCCATTGC CGCGCGATCT TTTCCAGCCG GAGCGCATCA ACTCGCGTGG AATCGAATTC
GGCGAGCGTG CCGCCGTCAA CCGGCTGGTC ACTGATGTCG CGACTGAACG CGTCTCAGCC
GTCCCCGTAA ACTATAGCGG GCCGAACGAC GTGAACCGTG CCGTTACTAC GGCGCGTGAC
GGCTTCTCCA CATGGAGCCG CGCACCGGCG ACGGAGCGGG CGGCCGCCCT GGAGCGCGCG
GCGGATTTGC TGGAGCAGCG ATCGGCGCGT TTCATCGCGT GGCTGCAAAG AGAAGGCGGC
AAGACGCTGG ATGATTGCGT GTCGGAAGTC CGCGAGGCCG CCGACTTCTG CCGCTACTAC
GCCGCGGAAG GCCGCAAGCT GTTCGGCGAC GCGCAACCGT TGCCCGGTCC GACCGGCGAA
CGCAACACGC TGCGGCTACG CGGACGCGGC GTTTTTGCCG CGATCTCGCC GTGGAATTTT
CCGCTGGCGA TCTTCATGGG TCAAGTGACG GCGGCGCTGA TGGCCGGAAA TGCCGTGGTC
GCAAAACCGG CCGAGCAGAC GCCGCGGATC GCGGTGGAGG CCGTGCGCCT GTTGCATGAA
GCCGGGATCC CGGTGAAGGC GCTTCACCTG ATTCAGGGCG ACGGACACAT CGGAGCCGCG
CTCGTCGCGC ACCGCGACAT CGCGGGCGTG GTCTTCACCG GTTCGACGGA GGTGGCGCGG
TCCATCAATC GCGTGCTCGC CGGAAAGGAC GGCCCCATCG TGCCGCTGAT CGCCGAGACC
GGCGGCATCA ACGCCATGAT CGCCGACGCC ACCGCGCTGC CCGAGCAGGT CGCCGACGAT
GTCGCGACGT CGGCATTCCG CTCGGCCGGG CAGCGCTGCT CCGCGCTGCG GCTTCTGTTC
GTTCAGGAGG ACGTGGCTGA TCGCATCATC GAGATGATCG TTGGCGCGGC GCGCGAGCTG
AAGATCGGCG ATCCGTCGGA TCCCGCCACG CATGTCGGCT GGGTGATCGA CGACGACGCC
AGGAAACGGC TGGATGCCCA CATCGCGCGC ATGACGCGCG AGGCCCGCGT CCATTTCGCA
GGGCCTGCGC CGTCATCCGG CAGTTTCGTC GCGCCTCATA TTTTCGAACT GGACGACGCG
CGGCACCTGA CCGAAGAGGT GTTCGGACCG ATCCTTCACA TCGTGCGCTA CAGTTCCTCC
GCGCTCGATG GCGTTCTGGA GGCCATTGCC GATAGCGGCT ATGGCCTGAC GCTCGGAATC
CACTCGCGCA TCGACGATAC GGTGGAAGCG GTCGTCGACC GACTTCAGGT CGGCAACGTC
TACGTCAACC GCAACATGAT CGGCGCCGTG GTCGGGGTGC AGCCGTTCGG CGGCCATGGC
CTGTCGGGAA CCGGGCCGAA GGCCGGCGGC CCGCACTATC TCACCCGGTT CGCCACCGAA
CAGACCGTGA CGGTGAATAC CGCCGCGGCC GGCGGCAACG CGGCATTGAT GACTGGAGAA
GGCTGA
 
Protein sequence
MSPQPPPPFS VPYAPDDRTI AKQLLTGARL APEQETRIDQ TARRLIDAIR QNDDPLGGVE 
DMLREFALST KEGLALMVLA EALLRVPDAE TADRFIEDRL GQGDFIHHET RSSAFLVNAS
AWALGLSARV IQPGETPQGT IGRLAKRLGV PAIRAATRQA MRLMGSHFVL GETIEAALER
THTHSAGCSR YSFDMLGEGA RTAADADRYF DSYAAAIEAI GRGAGDNPLP DRPGISVKLS
ALHPRYEAVS RGRVMAELVP RAIDLARRAR ALDLAFTVDA EEADRLELSL DVVAAIAVDR
SLAGWSGFGL AVQAYQKRAG AVIDYIDDLA QALNRRMMVR LVKGAYWDTE IKRAQERGLE
GYPVFTRKAM TDLNYLACAR KLLALRPRLF PQFATHNALT VATLLELTGG ESGFEFQRLH
GMGEALYAAL CKDRHAIACR IYAPVGSHRD LLAYLVRRLI ENGANSSFVA TASDPDVPPE
TLLRRPADII GSADNAGHAR IPLPRDLFQP ERINSRGIEF GERAAVNRLV TDVATERVSA
VPVNYSGPND VNRAVTTARD GFSTWSRAPA TERAAALERA ADLLEQRSAR FIAWLQREGG
KTLDDCVSEV REAADFCRYY AAEGRKLFGD AQPLPGPTGE RNTLRLRGRG VFAAISPWNF
PLAIFMGQVT AALMAGNAVV AKPAEQTPRI AVEAVRLLHE AGIPVKALHL IQGDGHIGAA
LVAHRDIAGV VFTGSTEVAR SINRVLAGKD GPIVPLIAET GGINAMIADA TALPEQVADD
VATSAFRSAG QRCSALRLLF VQEDVADRII EMIVGAAREL KIGDPSDPAT HVGWVIDDDA
RKRLDAHIAR MTREARVHFA GPAPSSGSFV APHIFELDDA RHLTEEVFGP ILHIVRYSSS
ALDGVLEAIA DSGYGLTLGI HSRIDDTVEA VVDRLQVGNV YVNRNMIGAV VGVQPFGGHG
LSGTGPKAGG PHYLTRFATE QTVTVNTAAA GGNAALMTGE G