| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nwi_2910 |
|---|
| Symbol | |
|---|
| ID | 3675579 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter winogradskyi Nb-255 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007406 |
|---|
| Strand | - |
|---|
| Start bp | 3144439 |
|---|
| End bp | 3146007 |
|---|
| Gene Length | 1569 bp |
|---|
| Protein Length | 522 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637714475 |
|---|
| Product | RND efflux system, outer membrane lipoprotein, NodT |
|---|
| Protein accession | YP_319512 |
|---|
| Protein GI | 75677091 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.691832 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCGGTCAA GTCGACAGAA TGGATCGGGA TTTCCTTCAC CGGGAACAGC GGGGAAGCTG
GCGTTTTCCT GCACGCGATG TTTCATCGTG GCGTTCCTGG CTGCCGCGTC GCCTGTGCTT
TCAGGCTGCG CGGTGGGACC TGACTTCAAA CCTCCGGCGC CCCCGGACAC CGTCAAATAC
TTGTCCGATC GCGCCGGGGA TCGCGTGCCC GGACATTCGA TCGTGCGCGC TGGGGAGGTT
CCTCCCCAAT GGTGGGAGCT GTTCCGCTCG CCCGCGCTGA ACCGCCTTGT GGAGGATGGT
ATCGCCCACA ATGCGGATCT CGCCGCCGCG GAGGCCGCGG TCAGGGTGGC GCAGGCCAAC
GCGCTGGCCC AGCGCGGGGC GCTGTTTCCC AGCGTCATGG GAAACTTCGA ATCCTCACGG
CAACAGGTGC CGGTCGATCT TCAATCGCCG CTCGAGTCGA ATGCTCACCT TCTGAGCCTG
CACACCGGTC AGGTCACCGT GTCTTACCTT GCCGATGTGT GGGGAGGGAC GCGCCGTCTG
GTCGAGTCCG CGAATTCGCA GGCGAGGATG CGCGCGTTCC AGCGCGAGGG GGTCTATCTG
ACATTGGCCA GCAACATCGC GCTTGCGGCG ATCGAGGAAG GCCGGCTGCG GGGACATATC
GCGGCGACCC GCCGTGTCCT CGGTTTGCAG GGCGAGGTTT TGAGGTTGCT GCGGCGGCAG
CAGGAGCAGG GGCAGATCGC CCAGACCGAC GTCGCGGCGC AGGAGACCGC GGTGGCGCAA
ACCCGGCTGC TGTTGCCGGA TCTCGAAAAG AAGCTCGCGC AACAGCGTCA TCTGTTGTCG
TTCCTGACCG GGCGTCTGGC GAGCGACGAC CCTAAAGAAA GGTTCGATCT CGGGTCATTT
CGAATGCCCC GTCGTCTGCC GCTCACTCTT CCGGCCGATC TCGTAAGGCA GCGCCCGGAT
ATTCAGGCCG CCGAAGCGGA CTTTCAGTCG GACAATGCGA TGATCGGAAT AGCGATCGCC
AATCGCCTCC CGCAGATCAC CCTGACGGCA AGCGGTGGAG CGGCGGCTGC CCAGTTTACG
CAACTGGCCA ATCCGGCCGC GGGGCTCGGG ATCATCGCCG GCAATGCGGC GCAGACCATT
TTTGACGCGG GGAGGCTGGA AAACCGGCAG CGCGCCGCGG AGGCGGAAGC CGAACAGTCG
CTCGCTCAGT ATCGCAGCGT CGTCCTCGCG GCTTTTCAAA ACGTCGCGGA CGTCTTGCGA
GCCCTTCAGG CGGGCACGCG CGCGATCAGT GCGGCGACGG GCGCGGAACG ATCGGCGACG
GAGAGCATCA CGCTCGTACG CAAACAGGTC GATCAGGGGC AGATCAGCGT GCCGCTTCTG
CTTGCCGCGC AGGAGGCTTA TCTGGAGACC TCTCTCGCGC GTCTCGATGC GCAGGCCGCG
CAACTGGCGA ATACCGCCGC GTTGTTTCAG GCGCTCGGCG GCGGGTGGTG GAACAGAGAC
GATCGCAAGC AGGCCGCGAT CAAAGTCGTA CCCGAAGTGA ACGAGGCTGG CCTTGTCCTT
AGAGCATGA
|
|---|
| Protein sequence | MRSSRQNGSG FPSPGTAGKL AFSCTRCFIV AFLAAASPVL SGCAVGPDFK PPAPPDTVKY
LSDRAGDRVP GHSIVRAGEV PPQWWELFRS PALNRLVEDG IAHNADLAAA EAAVRVAQAN
ALAQRGALFP SVMGNFESSR QQVPVDLQSP LESNAHLLSL HTGQVTVSYL ADVWGGTRRL
VESANSQARM RAFQREGVYL TLASNIALAA IEEGRLRGHI AATRRVLGLQ GEVLRLLRRQ
QEQGQIAQTD VAAQETAVAQ TRLLLPDLEK KLAQQRHLLS FLTGRLASDD PKERFDLGSF
RMPRRLPLTL PADLVRQRPD IQAAEADFQS DNAMIGIAIA NRLPQITLTA SGGAAAAQFT
QLANPAAGLG IIAGNAAQTI FDAGRLENRQ RAAEAEAEQS LAQYRSVVLA AFQNVADVLR
ALQAGTRAIS AATGAERSAT ESITLVRKQV DQGQISVPLL LAAQEAYLET SLARLDAQAA
QLANTAALFQ ALGGGWWNRD DRKQAAIKVV PEVNEAGLVL RA
|
|---|
| |