Gene Nwi_2284 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNwi_2284 
Symbol 
ID3675732 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrobacter winogradskyi Nb-255 
KingdomBacteria 
Replicon accessionNC_007406 
Strand
Start bp2496543 
End bp2497754 
Gene Length1212 bp 
Protein Length403 aa 
Translation table11 
GC content63% 
IMG OID637713847 
Productsecretion protein HlyD 
Protein accessionYP_318890 
Protein GI75676469 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0845] Membrane-fusion protein 
TIGRFAM ID[TIGR01730] RND family efflux transporter, MFP subunit 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.831641 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.154042 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGGTAA GAAGGGAAGG CGATACCGGC GACATGACAG AGGTGCCGCC GCGCGAACTG 
AACGAAAAGC CTCGCACGCG CCCGGTGCGC ATGACGCGCT GGTTTATCAT CGGGGGAATA
TTGCTCTCGT TGCTGGTCGG CGGGCTGGTA GGGTTCAATG CCTTCCGCGC GCACATGATC
GCGCAGTTCT TTGCCAACAA TAAGCCGCCG CCGGTGACGA TCAGCGCGGT CGAGGTCAAA
TCTGAAGTCC TGCCCAATCT GCAGCGGGCG GTCGGCAGCC TGGCCGCGGT GCATCAGGTC
AACGTTTCAT CGGATGTTAA CGGCCGCATT ACCGAGATTT TATTCACCGC CGGCAGCCGT
GTCGTTAAGG GCGCGCCGCT GGTTCAACTG TTCGACAAGC CGGAACAAGG CGACCTGGCC
AGCTTCAAGG CTCAGGCGAC GGTCTCACGC CTTGCTCTGG AGCGGGCGAA GCAGCTCGCC
GCGCGTCAGG TCGGTCCGCA GGTGACGGTG GATCAGGCGC AGGCCGCTTT CGACCAGGCC
AATGCGGGCA TCGCCAAGAC CGAGGCGATC ATTTCGCAGA AGCTGGTGCG CGCGCCGTTC
GACGGCGTGC TCGGCGTCCG TCAGGTGGAA GTGGGGCAGT TTCTGAACGC CGGAACGCCG
ATCGTGTCGC TGACCGATCT GTCGACCCTG TTCGCGAACT TCACGGTGAC TGAAAAGGAC
AGCGCACGGC TTGCGGTCGG CCAGACGGTG CGGGTGTCGG TCGATGCCTA TCCGGGCAGG
GAGTTTGACG GCAAGATCAC CACCATCGAG CCGCAGATCG CCACTGAAAC CCGCAATATC
CGAGTCCAGG CCACCATCGC CAACCCGGAC AACATCCTTA AGCCCGGCAT GTTCGCCGAT
GTGATCGTGG TGCTGCCGGA CAAGCCGCCG GCTGTCACGG TCCCGGAAAC CGCGGTCGAT
TACACGCTGT ATGGCGACTC CGTCTATCTC ATCAAGGAGA AGAAGGAGGA CGACGGCAAG
ACCAGCTTGA CGGTCGAGCG CACCTTTGTC CGCACCGGCG ACCGGATCAA TGGCCGCGCG
ATCATCGAGA AAGGGGTCAA GCCCGGCGAC AGGGTCGCCG CGGTCGGCCA GCTCAAGCTG
CAGTCGGGCG CCGCGGTCGA GATTTCGAAA GATCAGATGC CGCAGATTCC GGCGGAGCCG
CCGCTGAACT GA
 
Protein sequence
MTVRREGDTG DMTEVPPREL NEKPRTRPVR MTRWFIIGGI LLSLLVGGLV GFNAFRAHMI 
AQFFANNKPP PVTISAVEVK SEVLPNLQRA VGSLAAVHQV NVSSDVNGRI TEILFTAGSR
VVKGAPLVQL FDKPEQGDLA SFKAQATVSR LALERAKQLA ARQVGPQVTV DQAQAAFDQA
NAGIAKTEAI ISQKLVRAPF DGVLGVRQVE VGQFLNAGTP IVSLTDLSTL FANFTVTEKD
SARLAVGQTV RVSVDAYPGR EFDGKITTIE PQIATETRNI RVQATIANPD NILKPGMFAD
VIVVLPDKPP AVTVPETAVD YTLYGDSVYL IKEKKEDDGK TSLTVERTFV RTGDRINGRA
IIEKGVKPGD RVAAVGQLKL QSGAAVEISK DQMPQIPAEP PLN