| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nwi_2271 |
|---|
| Symbol | |
|---|
| ID | 3675176 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter winogradskyi Nb-255 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007406 |
|---|
| Strand | - |
|---|
| Start bp | 2476082 |
|---|
| End bp | 2476918 |
|---|
| Gene Length | 837 bp |
|---|
| Protein Length | 278 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637713834 |
|---|
| Product | squalene/phytoene synthase |
|---|
| Protein accession | YP_318877 |
|---|
| Protein GI | 75676456 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1562] Phytoene/squalene synthetase |
|---|
| TIGRFAM ID | [TIGR03465] squalene synthase HpnD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.3606 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.152656 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAATCG CGACGACAGC CGACGCGAGT TCGGGAGAAA CCGCGTCCAA CAGTTCGTTC
TACGCGGCGA TGCGTATCCT GCCGCGCGCG CAGCGCGAGG CGATGTTCCA GATCTACACG
TTTTGCCGCT ATGTGGACGA CATTGCGGAT TCGGACCGTC CACGGTCCGA ACGGCAGGCC
GCGCTTCAGC AGTGGCGTGA CGATATCGAC GCGCTCTATC AGGGACGCGC GCCGGAACGG
TTGCGCGATT ACGTCGCCTC CGTTGACGCC TTCGGCATGC GCCGCGAGGA TTTTCTTGCC
GTCATCGACG GTATGGAAAT GGACGTGCTG GCGGATATTC GCGCGCCTGA GGAAGCCACG
CTCGATCTGT ATTGCGATCG CGTCGCCAGC GCCGTCGGAC GGCTGTCGGT CCGGGTGTTC
GGCTTGCCTG AGCAGGACGG CATCCTGCTC AGCCACCATC TTGGCCGCGC CCTGCAGTTG
ACGAACATCC TGCGTGACCT CGACGAGGAC GCCGCGATCG GCCGGCTGTA CGTGCCGCGC
GAGGAACTGC TCCGCGCCGG TATAGACTGC ACCGATCCGG CCGCCGTGAT ATCGAGCCCG
GCGATCCCCG AAGTCTGTGT CCGGCTCATG GAGCGGGCGC GGACGCATTT CGTCGAATCG
GACGAGATCA TGAATCGTAA CGCGCGCCGT GCCGTGCGAG CGCCGCGCAT CATGTCGAAA
TATTATCACG CGATACTGGA TTTGCTGGAG GAGCGCGGTT TTCAGCCGCC ACGTTCACCC
GTCCGCGTGA GCTACGCGGC GAAGATCGCC ATCGTCCTTC GGTATGCGTT GATCTGA
|
|---|
| Protein sequence | MTIATTADAS SGETASNSSF YAAMRILPRA QREAMFQIYT FCRYVDDIAD SDRPRSERQA
ALQQWRDDID ALYQGRAPER LRDYVASVDA FGMRREDFLA VIDGMEMDVL ADIRAPEEAT
LDLYCDRVAS AVGRLSVRVF GLPEQDGILL SHHLGRALQL TNILRDLDED AAIGRLYVPR
EELLRAGIDC TDPAAVISSP AIPEVCVRLM ERARTHFVES DEIMNRNARR AVRAPRIMSK
YYHAILDLLE ERGFQPPRSP VRVSYAAKIA IVLRYALI
|
|---|
| |