Gene Nwi_1922 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNwi_1922 
Symbol 
ID3676777 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrobacter winogradskyi Nb-255 
KingdomBacteria 
Replicon accessionNC_007406 
Strand
Start bp2106787 
End bp2109111 
Gene Length2325 bp 
Protein Length774 aa 
Translation table11 
GC content64% 
IMG OID637713486 
ProductRelA/SpoT protein 
Protein accessionYP_318534 
Protein GI75676113 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases 
TIGRFAM ID[TIGR00691] (p)ppGpp synthetase, RelA/SpoT family 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.604164 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAAGGGCG GTTTCCGCGC GATGAAGACA CTCGGTTCGA TGACAGGCTG GCCTGGCAAA 
AGGCGGCAGA TGGAGGCCGC GACCGATCCG GTCGTGACGG CGCCGCCGCC GGCTGCTCCT
GTCAAGCCGA CGCGCCCGCG TATGATGCGT CAATACGACC TGGTCGAACG CGTGCGCTCC
TACAACCCCG ACACCAACGA GGATATGCTC AACCGGGCGT ACGTCTATGC CATGAAAGCT
CATGGCGAAC AGATACGGGC GTCGGGCGAT CCCTATTTCT CTCATCCGCT TGAAGTGGCG
GCCATCCTGA CCGGTCTCAA GCTCGACGAC GCCACCATCG TCGCGGCGCT GCTGCACGAC
ACCATTGAGG ACACCGAGGC CACCCGCGCC GAGATCGACA ACATGTTCGG GCCGGAGATC
GGCGCGCTGG TCGAGGGCCT GACCAAGCTG AAGCGGCTGG AACTGGTCTC GCGCGAGGCC
AAGCAGGCCG AAAATCTGCG CAAGCTGCTG CTGGCGATTG CCGATGATGT CCGCGTGCTG
CTGGTCAAGC TGGCGGATCG GCTGCACAAC ATGCGCACGC TGGAGTTCGT GCCGCCGGCG
TCGCGTCAGC GCATCGCCGA GGAAACCCTC GACATCTACG CGCCGCTCGC GGGCCGCATG
GGCATGCAGG AAATGCGCGA GGAGCTTGAG GATCTGGCGT TCCAGACCCT CGATCCGGAA
GCCCACGGGG TGGTGGCGCA GCGGCTCGAC GCGCTGGCCG AGCGTAACCG CAACCTGATC
GGTGAGATCG AAAGCCAGCT CACGACCAGT CTCGCCAACA AGGGTATCGC CGCGCGCGTA
GCCGGCCGCC GCAAACAGCC GTTTTCGATC TGGACCAAGA TGGAACGAAA ATCGGTCGGT
TTCGAGCAGC TTTCCGATAT TTTCGGATTT CGCGTCGTGG TGCCCGATGT CGAAGCCTGT
TATCGCGCCC TCGGGGTGGT CCACATGACG TGGCCGGTCG TGCCGGGCCG TTTCAAGGAC
TATATCTCGA CGCCGAAGCA GAATGACTAT CGCTCGATCC ACACCACGGT GATCGGACCG
GGCAATCAGC GCGTGGAATT GCAACTCCGG ACCGAGGAGA TGGATCGCAT CGCGGAGCAC
GGCATCGCCG CCCATGCCTT TTACAAGGAC GGGGCGGGCT CGCCGACGGA ATTGCTCAAT
CGGGAATCCA ATGCGTTCGC CTGGCTGCGT CATACCATCG AAGTGCTGTC GGAAAGCGCC
AATCCGGAGG AGTTCCTCGA ACACACCAAG CTCGAACTGT TTCACGATCA GGTCTTCTGC
TTCACGCCGA AGGGGAAGCT GATCGCGCTG CCGCGGCACG CCAATGTCAT CGACTTCGCT
TATGCCGTGC ATACCGACGT CGGCAACAGC ACGGTGGGTT GCAAGATCAA CGGCAAGTTT
GCGCCGCTGT CGTCACGATT GCAGAATGGA GACGAGGTCG AGGTTCTGAC GTCGGCCGCC
CAGTCAGCGC CGCCCTCCGC CTGGGAATCG CTCGCCGTCA CCGGCAAGGC GCGGGCGGCG
ATCCGGCGCG CCACGCGAGC CGCCGTGCGC GGTCAGTATG TCAGCCTTGG CCGGCGGATC
GTTGAGCGCC TGTTCATCCG CGCTAAGATC GAATACGCCG ACGACAAGCT TACCGGCGCG
TTGCCCCGGC TGGCGCGGGC CACGATCGAG GACGTCATGG CTTCGGTGGG GCGGGGCGAG
ATGCGCGCCG CCGATGTCGC GCGCGCGATG TACCCGGACT ACAAGGAGGA GCGGGTTGGC
GGCCCGGGCG TCAAGAAGAG CCTGACGGCG AAACTCAAAC TGAAAACGCC GCTGGATCCC
GCTCGCAGCC CGTCGGTGAT TCCGATAGGC GGCATCAATT CGGACCTGCC GATCAAATTC
GCGCCCAATG GCGGCGCGGT GCCCGGCGAC CGTATCGTCG GCATCGTCAC TCCCGGTGAA
GGCATCACGA TCTATCCGAT TCAATCGCCG GCGTTGACGG ATTTCGAGGA AGAGCCCGAG
CGCTGGCTCG ACGTTCGTTG GGATGTCGAT GACACGACGC CGCAGCGATT CCCCGCGCGC
ATCGTGCTGG ATAGCCTCAA CGAGCCCGGC AGCCTCGCAC AGGTCGCGAC CGTGATCGCC
GAGCACGACG GCAATATCGA CAATATCAGC ATGACCAGGC GTTCGCCCGA CTTCACCGAA
ATGACCATCG ATCTCGAAGT GTATGACCTC AAGCATCTCA GCGCCATCAT CGCCCAGTTG
CGCGCCAAGG ACGTCGTGGC GCGGATCGAG CGGGTCAACG GCTAA
 
Protein sequence
MKGGFRAMKT LGSMTGWPGK RRQMEAATDP VVTAPPPAAP VKPTRPRMMR QYDLVERVRS 
YNPDTNEDML NRAYVYAMKA HGEQIRASGD PYFSHPLEVA AILTGLKLDD ATIVAALLHD
TIEDTEATRA EIDNMFGPEI GALVEGLTKL KRLELVSREA KQAENLRKLL LAIADDVRVL
LVKLADRLHN MRTLEFVPPA SRQRIAEETL DIYAPLAGRM GMQEMREELE DLAFQTLDPE
AHGVVAQRLD ALAERNRNLI GEIESQLTTS LANKGIAARV AGRRKQPFSI WTKMERKSVG
FEQLSDIFGF RVVVPDVEAC YRALGVVHMT WPVVPGRFKD YISTPKQNDY RSIHTTVIGP
GNQRVELQLR TEEMDRIAEH GIAAHAFYKD GAGSPTELLN RESNAFAWLR HTIEVLSESA
NPEEFLEHTK LELFHDQVFC FTPKGKLIAL PRHANVIDFA YAVHTDVGNS TVGCKINGKF
APLSSRLQNG DEVEVLTSAA QSAPPSAWES LAVTGKARAA IRRATRAAVR GQYVSLGRRI
VERLFIRAKI EYADDKLTGA LPRLARATIE DVMASVGRGE MRAADVARAM YPDYKEERVG
GPGVKKSLTA KLKLKTPLDP ARSPSVIPIG GINSDLPIKF APNGGAVPGD RIVGIVTPGE
GITIYPIQSP ALTDFEEEPE RWLDVRWDVD DTTPQRFPAR IVLDSLNEPG SLAQVATVIA
EHDGNIDNIS MTRRSPDFTE MTIDLEVYDL KHLSAIIAQL RAKDVVARIE RVNG