| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nwi_1776 |
|---|
| Symbol | |
|---|
| ID | 3675656 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter winogradskyi Nb-255 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007406 |
|---|
| Strand | - |
|---|
| Start bp | 1946505 |
|---|
| End bp | 1947998 |
|---|
| Gene Length | 1494 bp |
|---|
| Protein Length | 497 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637713336 |
|---|
| Product | seryl-tRNA synthetase |
|---|
| Protein accession | YP_318389 |
|---|
| Protein GI | 75675968 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0172] Seryl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00414] seryl-tRNA synthetase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0925083 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.00473675 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGCACGACA TCAAAGCGAT CCGCGACAAC CCGCAAGCGT TCGACGCCGC GCTGAAGCGG
CGAAGACTAT CTGATACAGA TCGCGTGCGG TTTTCTTCGG AAGAAATTTT GAAATTCGAC
GCAGAGCGGC GGACCCTTAT CGCAACAGTT GAGCAATGGA AGTCAACGCG GAACCAGATT
TCAAAAGAAA TTGGTATTGC GATGCGCGAG AAAGATGAGG TCAGAGTAGC GGCGTTGATG
GAAAAGGTCG ACCGCCTTAA GCACGATATT ATCAGCGGAG GAAGTAACCT TATTATCGAG
CGTGAGGTTG GGTTGAAGAA CCTGTTGGCA GAGATTCCGA ACCTGCCGCT CGACGAGGTG
CCTGACGGCG CCGACGAGCA CGGCAACGTG CAGCATCACA TCTTCGGAAA AAAACGCGAC
TATGCGTTTA CGCCGAAACC GCACGACGAT CTCGGCGGCG CGCTCGGCGA TATGGATTTC
GAGGCGGCGG CGAAACTGTC CGGCGCGCGC TTCGTGGTGC TGAAGCGCGG GCTGGCGCGA
CTCGAACGCG CCATCGGGCA ATTCTTCCTC GATGTCCACA CCGGCGAGCA CGGCTACACC
GAGGTCAACC CGCCTTTGCT GGTGCGTGAC GACGCGATGT TTGGCACCGC GCAATTGCCG
AAGTTTCGAG AAGACCAGTT TCTGGCCCGG AGCCCAATCG GCGGCAATTT GCTCTACGAC
GAGTTGGACG CTGAGACGCG AGAAAGTCCA GAAGCGATTG CCAGATATGC CTTGGCTGCG
CTCGCAGGTC GGACCATCGA AGAGCAGGGT GTTCTAGGTT GGTCGAACGT AGCTATGCCC
GACTTCGTAA AGTTGCGGGA GCAGTTGCCC GTCTCGACGA GTTGGCTCAT CCCCACTGCC
GAAGTCCCGC TCACAAATCT CGTCCGCGAA TCCATCCTCG ATGAAAAAGA ACTGCCGCTG
CGCTTCACCG CGTTGACGCC GTGTTTTCGC GCCGAAGCGG GCGCTGCCGG TCGCGACACC
CGCGGCATGA TCCGCCAGCA TCAGTTCACC AAGGTCGAGC TGGTGTCGAT CACCACGCCG
GAAACATCCA AGGACGAGCA CGAGCGCATG TTGTCATGCG CGGAAGAAGT GCTGCGCCGG
CTCGACCTGC ATTACCGCGT GATGACGCTG TGCACCGGCG ACATGGGCTT CGCCTCGCAG
AAGACCTACG ACATCGAGGT GTGGATGCCG GGACAAGGAG AGGGCGGCGC TTATCGCGAG
ATTTCGTCCT GCTCGGTGTG CGGCGATTTC CAGGCGCGAC GCATGGACGC GCGCTATCGC
AGCAGCGACG GCAAGCCGCG CTTCGTCCAC ACGCTCAACG GCTCCGGCAC TGCCGTGGGT
CGCGCGCTGA TCGCGGTGAT GGAGACTTAC CAGCAGGCCG ACGGCTCCAT CGCCGTGCCC
GATGTCTTGC AGCCCTACAT GGGCGGCCTG AAGGTGATCG CGAAAGATAT GTAG
|
|---|
| Protein sequence | MHDIKAIRDN PQAFDAALKR RRLSDTDRVR FSSEEILKFD AERRTLIATV EQWKSTRNQI
SKEIGIAMRE KDEVRVAALM EKVDRLKHDI ISGGSNLIIE REVGLKNLLA EIPNLPLDEV
PDGADEHGNV QHHIFGKKRD YAFTPKPHDD LGGALGDMDF EAAAKLSGAR FVVLKRGLAR
LERAIGQFFL DVHTGEHGYT EVNPPLLVRD DAMFGTAQLP KFREDQFLAR SPIGGNLLYD
ELDAETRESP EAIARYALAA LAGRTIEEQG VLGWSNVAMP DFVKLREQLP VSTSWLIPTA
EVPLTNLVRE SILDEKELPL RFTALTPCFR AEAGAAGRDT RGMIRQHQFT KVELVSITTP
ETSKDEHERM LSCAEEVLRR LDLHYRVMTL CTGDMGFASQ KTYDIEVWMP GQGEGGAYRE
ISSCSVCGDF QARRMDARYR SSDGKPRFVH TLNGSGTAVG RALIAVMETY QQADGSIAVP
DVLQPYMGGL KVIAKDM
|
|---|
| |