| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nwi_1720 |
|---|
| Symbol | |
|---|
| ID | 3674733 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter winogradskyi Nb-255 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007406 |
|---|
| Strand | + |
|---|
| Start bp | 1878284 |
|---|
| End bp | 1881463 |
|---|
| Gene Length | 3180 bp |
|---|
| Protein Length | 1059 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637713278 |
|---|
| Product | ribonuclease E and G |
|---|
| Protein accession | YP_318333 |
|---|
| Protein GI | 75675912 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1530] Ribonucleases G and E |
|---|
| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.325079 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0192553 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCCGGC CGCGCGCCAC GCGCTTGCCA TGTCATGCGC CCTCCGCCTC CAAGAGCTTC
AAAATGCCCA ACAAGCCCAA CAAAATGTTG ATCGACGCCA CCCACCCGGA AGAAACCAGG
GTGGTGGTGG TCCGCGGTAA CCGCGTCGAG GAATTTGATT TCGAATCCGC CCAACGCAAA
CAACTGCGCG GCAACATCTA TCTGGCCAAG GTCACCCGGG TCGAACCGTC TCTACAAGCT
GCGTTTATCG AGTACGGAGG AAACCGGCAC GGTTTCCTGG CGTTCAGCGA AATCCATCCC
GACTATTATC AAATTCCGGT CGCCGACCGT CAGGCGCTGA TCGAGGCGGA CGAGCGGGCG
CACCGCGAGG CCGAGGAGGA GTCCGAAGAT CGCTCCAGCC GCCGTCGTTC GCGGCATCGC
AACGCCCGCC GGCGCGATCA TGGCGAACGC GTGCAAAGCG CCGTTGTCGA GAACGGGGAG
CATCAGGTCG CGGGCGCGGA CGGGACGCAA TCCGACCCGT CGCATTCCGA CCCGTCGCAT
GATGAATTCG CGGCTGGCGA CCACCTCGGG CAACAGCACG ACGTACAGGA TCACGATCAG
CCGAACGATC CGGATCACCA TCATCTGGAT GATGACGATC ATTCGCACGA GTCTGGATCA
ATCTCGTTAT ACGGCTCCGA CTACGAAACC GTCGCGGACC ACCTGCCGGA GTCCCCGGAC
TTCGCTTTCG CCGCTGATTC CGATAATGGG GATCACGAGC AAGACGAAAA TCAGGAGGAT
ACCGGTGACG ATCAGGTTGC CGCGTCTTCG GAAGAGGATT TGCCCTCGAT AGCGCCGCAT
GACGCGGTCG GCTCGGAGCC TTCTGCTGAC GACGGCGCCC GGGACGATCA GGTCGAACCG
GCGATATCTT CCTCTCCGAA TGAGGATCAT GCGCTCGGCG TACATGCGAG CGGTGATCAC
GACCACGACG AGCCTCATGC CGAAGAATTT CATGGGGATG AGGTCCGTGT CGAAGATCGC
GCCGATGATG ATGGCGACGA TGACGAAGAA GAGGAGCAGG TCGAATCCGT CGGCGGCGAT
GATGCTCTCG AGGAAGTGCC GGAGCGGGCG TTCCGGCCGC GCCGTCAGTA CAAAATCCAG
GAAGTCATCA AGCGCCGCCA GGTCATGCTG GTGCAGGTCG TCAAGGAGGA GCGTGGCAAC
AAGGGCGCGG CGCTGACGAC CTATCTGTCG CTGGCCGGCC GGTATGCCGT GCTCATGCCC
AATACCGCGC GCGGCGGCGG CATCAGCCGC AAGATCACCT CGGCGCAGGA CCGTTCGCGG
CTCAAGGAAG TGGTCCAGGA CCTCGATGTC CCCGAGGGAA TGGGAGTCAT CCTGCGCACC
GCCGGCGCTG CGCGCACCAA GCCGGAGATC AAGCGCGACT TCGAGTATCT GATCCGCATG
TGGGAAACCG TGCGCGATAT GACCCTGCGG TCCCAGGCGC CGACGCTCGT TTACGAGGAA
GGCTCGCTGA TCAAGCGCTC CCTCCGCGAT CTCTACAGCA AGGAAATCGA CGAAATCCTG
GTGGCCGGTG AAGCCGGCTA TCATGAAGCG CGCGGTTTCA TGAAGATGCT GATGCCTTCC
AACGCCAGGG CCGTGAAGCA GTATCGCGAC TGCCAGCCCC TGTTTTCGCG GATGGGCGTC
GAGAGCCAGC TGGACGCGAT GTTTCTGCCG ACGGTGCAGC TTCGCTCCGG CGGATATATC
GTCATCAACC AGACCGAAGC GCTGGTGTCG ATCGACGTCA ACTCAGGCCG CTCGACCCGC
GAACATCACA TCAAGGACAC CGCGCTCAAG ACCAATCTCG AGGCTGCCGA GGAAGTCGCC
CGGCAGTTGC GGCTGCGCGA TCTTGCCGGC CTGATCGTCA TCGACTTCAT CGACATGGAC
GAGAAGCGAA GCAACCGCGC GGTGGAGCGT AAGCTCAGCG AGTGCCTGCG CCACGATCGC
GCGCGCATCC AGGTCGGTCG AATTTCGCAC TTCGGTCTTC TGGAAATGTC GCGCCAGCGC
ATTCGCGCCA GCATGCTGGA AAGCTCGACG GAGCCCTGCC CGCAATGCGG CGGCAGCGGC
CATGTTCGCT CGGTACCCTC GGTGGCGCTA CAGTTGTTGC GCAGCCTCGA GGAAGTTCTG
ATGAAAGGCG CGACGCACAA CCTTATCGTA CGGACGCGCA TCAACGTCGC GTTGTATGTG
CTCAATCAGA AGCGCGAGCA TCTGCGCGCC CTGGAGCACA GCTTCAGGGT TGGTCTCTCC
GTGGTCGCCG ACCCCGCGAT CGCGGGTCAG CAGTCCTTCG TGATTGATCG CGGCGAGCAG
GTGCATACCC TGGAGGCCGC AAAAGCGCTA TTGGCGACAC AACTCGTCAC ATACCCGCCA
CAAGCTGAGG ATGTTCAGGA CGACGAACCG ACGCTGGATA CGGAGACCGA GACCGAGGCC
GATGACGCCG AAGTTCGCGT CGATGAGCAG GCAGGCGGTG AGACCGAGGG TGACGGCCGC
AAGCGCAGGC GACGCCGTCG GCGTGAACGC TCCAGCGAAA CGAACGACAG CCAGGTCTCA
CAAGCGGTCG AGGTTCCGGA CAGCGTCCAG ATTGCCGCCG AGTTCGCCGC CGCGCGCTTC
ATGATCGACG ACGTCGAGAA TGAGGGAGAG GACTCTTCGG CGCAGGAGAG CGCGGCGCCA
GCCGATCAGC CTGCGGACGA ACGCCGCCCG CGACGGCGCG GGCGTCGCGG CGGACGCCGG
CGCCGCGGCA CCAACGGTGC GAATCCTGTC GATTCGGCTT CCGACGAACT GAACGTCACT
TCGGTATCGG AAGCCGTCGA CGCTGTCGCG GACCTCGATT CCGTGTCGCT GGCGCCGGAA
GCGCGGAGCG AACCGGCTGA ATCTGAAACT CAGCCACAGC AGCAGAGCGA AGAGTCGGCG
AGTTCCCCGG CTGAAACCGG AAACGGCACC GTTCCGGAGC CCGAGAAAGC TGTTTGCCGT
CGCTCGACGG TGCGTGAGAA GGTGAGCTTC ACCTCGCAGG AAGAACCGCC TTCCGTTCCG
GTCGTTCAAG GCGAGCCGGA AGAGTCGACG CCCGAGGCGC AACAGCCTCC GCAAGCATCG
GACGAAACCC GGCCGCGCCG CGCCGGATGG TGGTCGCGCC GGTTCGGTGG CGGCACCTGA
|
|---|
| Protein sequence | MGRPRATRLP CHAPSASKSF KMPNKPNKML IDATHPEETR VVVVRGNRVE EFDFESAQRK
QLRGNIYLAK VTRVEPSLQA AFIEYGGNRH GFLAFSEIHP DYYQIPVADR QALIEADERA
HREAEEESED RSSRRRSRHR NARRRDHGER VQSAVVENGE HQVAGADGTQ SDPSHSDPSH
DEFAAGDHLG QQHDVQDHDQ PNDPDHHHLD DDDHSHESGS ISLYGSDYET VADHLPESPD
FAFAADSDNG DHEQDENQED TGDDQVAASS EEDLPSIAPH DAVGSEPSAD DGARDDQVEP
AISSSPNEDH ALGVHASGDH DHDEPHAEEF HGDEVRVEDR ADDDGDDDEE EEQVESVGGD
DALEEVPERA FRPRRQYKIQ EVIKRRQVML VQVVKEERGN KGAALTTYLS LAGRYAVLMP
NTARGGGISR KITSAQDRSR LKEVVQDLDV PEGMGVILRT AGAARTKPEI KRDFEYLIRM
WETVRDMTLR SQAPTLVYEE GSLIKRSLRD LYSKEIDEIL VAGEAGYHEA RGFMKMLMPS
NARAVKQYRD CQPLFSRMGV ESQLDAMFLP TVQLRSGGYI VINQTEALVS IDVNSGRSTR
EHHIKDTALK TNLEAAEEVA RQLRLRDLAG LIVIDFIDMD EKRSNRAVER KLSECLRHDR
ARIQVGRISH FGLLEMSRQR IRASMLESST EPCPQCGGSG HVRSVPSVAL QLLRSLEEVL
MKGATHNLIV RTRINVALYV LNQKREHLRA LEHSFRVGLS VVADPAIAGQ QSFVIDRGEQ
VHTLEAAKAL LATQLVTYPP QAEDVQDDEP TLDTETETEA DDAEVRVDEQ AGGETEGDGR
KRRRRRRRER SSETNDSQVS QAVEVPDSVQ IAAEFAAARF MIDDVENEGE DSSAQESAAP
ADQPADERRP RRRGRRGGRR RRGTNGANPV DSASDELNVT SVSEAVDAVA DLDSVSLAPE
ARSEPAESET QPQQQSEESA SSPAETGNGT VPEPEKAVCR RSTVREKVSF TSQEEPPSVP
VVQGEPEEST PEAQQPPQAS DETRPRRAGW WSRRFGGGT
|
|---|
| |