| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nwi_1524 |
|---|
| Symbol | |
|---|
| ID | 3676549 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter winogradskyi Nb-255 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007406 |
|---|
| Strand | - |
|---|
| Start bp | 1662411 |
|---|
| End bp | 1663895 |
|---|
| Gene Length | 1485 bp |
|---|
| Protein Length | 494 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637713078 |
|---|
| Product | RND efflux system, outer membrane lipoprotein, NodT |
|---|
| Protein accession | YP_318137 |
|---|
| Protein GI | 75675716 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.205747 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGCGCTC CCGCCGCCAG GGCTTTGGGC CATCCTCTGA GACGCGCGAC ATGGATCCGG
CGTTCCGCGA TGCTCCTGCC GCTATGGGCG GCGGTCGCGG CGTCGGCCGG CTGCATTCTG
ACACGGGATA TTCCGGATCC GGCGCTGGAT ATTCCGATGG CGTACAAGGC CGCGAGCACG
ACCGCGGCTG ACGCCCTGCC GGCGCTCGAC TGGTGGCGCG GCTTTCGCTC GTCCGAACTC
ACCTCCCTGA TGGAAGAGGC CCAGACCGTC AATCTCGATA TCGCAGCGGC GGCCGCGAGG
ATCATTCAGG CCGACCGGCA GGCCCGGATC ATCGGCGCGG CGCTATTGCC GAGCGTCAGC
ATCGGCGGGC AGGAATCCTA TTTCCGCACG TCGGGTTCGA GCCAAAGCGG CCTGACCAAT
CGTGGCCGGG AAGTCGTGAA CTACTCGGGC ACGTTGAGCG GCGCCAGCTA TGAGCTCGAT
TTCTGGGGCA AGAACCGCGA TGCCACGCTG GCCGCGCTGG AGACGGCCAA CGCCAGCCGC
TTTGACCGCG ACGTGGTCGC GCTGACGACG CTGGTCAGCG TCGCGAATGC CTATTTCCAG
GTCCTCACGG CGCAGGACCG CATTCGCACC GCCGAACGCA ACATCGCCAG CGCCCGGCGT
ATTCTGGACG CGCTCAAACA GCGGCTGAGC GCCGGCACCG GATCCGACCT CGACGTTGCG
CAGCAGGAGA GCGTGCTGGC AAATCTGCGC GCGACCGTTC CGCAACTCAG GCAGACGCTG
GTACAGAACA TCAACGCGCT CGCGACGCTG GTGGCTCGCC CGCCGGAAAG CGTGACCGTG
AAGGGCGGTT CGCTCAACCG CATCACCGCG CCAAGGGTGA CGCCCGGGCT GCCGTCCGAA
TTGCTGACCC AGCGCCCGGA CATCCGCCGT CAGGAGCTGC AGCTCGCCTC GGCGACCGCG
AATGTCGGTA GCGCGCGGGC ACAGTTCTTT CCAAGCATTC AGTTGACCGC GCAGGGCGGC
TACCAGAGCC CGGCGCTGGT CGCGCTGTTC GCCCCCAATG CCGCATTCTT CAACCTCGCC
GGCGCACTGA CGCAGCCGAT CTTCGATGGC CGCAGGATCC TCAGCAATTT CGAACTCACG
AAGGCGAGGC AGGACGAACT GCTTCAGACT TACCGCAAGA CGGTGATCTC GGCGTTCGCC
GATGTCGGCA ACGCGCTGAC TGCCGTGCGT CAAACCACCG AGCGGCTGCG CCTCCAGCGT
GAGGTCGTGG CCGCTTCGCG CAAAGCGTTC CAGCTCTCCG AACAACAGCT ACAGGCCGGT
ACCGCCGACA TCATCATCGT GCTGAACACG CAATTGACGC TTTTTCAGGC GGAAGATGTC
CTGTCGCAAG CGCAGCTTGC ACGGTTACAG GCGATCGTGA GTCTTTATCA GGCCCTGGGC
GGCGGCTGGG AGCCGCGGAT CGAGAGGGCG GGCAATGCTC TTTAG
|
|---|
| Protein sequence | MSAPAARALG HPLRRATWIR RSAMLLPLWA AVAASAGCIL TRDIPDPALD IPMAYKAAST
TAADALPALD WWRGFRSSEL TSLMEEAQTV NLDIAAAAAR IIQADRQARI IGAALLPSVS
IGGQESYFRT SGSSQSGLTN RGREVVNYSG TLSGASYELD FWGKNRDATL AALETANASR
FDRDVVALTT LVSVANAYFQ VLTAQDRIRT AERNIASARR ILDALKQRLS AGTGSDLDVA
QQESVLANLR ATVPQLRQTL VQNINALATL VARPPESVTV KGGSLNRITA PRVTPGLPSE
LLTQRPDIRR QELQLASATA NVGSARAQFF PSIQLTAQGG YQSPALVALF APNAAFFNLA
GALTQPIFDG RRILSNFELT KARQDELLQT YRKTVISAFA DVGNALTAVR QTTERLRLQR
EVVAASRKAF QLSEQQLQAG TADIIIVLNT QLTLFQAEDV LSQAQLARLQ AIVSLYQALG
GGWEPRIERA GNAL
|
|---|
| |