| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nwi_1513 |
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| Symbol | |
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| ID | 3675916 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter winogradskyi Nb-255 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007406 |
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| Strand | - |
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| Start bp | 1643185 |
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| End bp | 1646709 |
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| Gene Length | 3525 bp |
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| Protein Length | 1174 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637713066 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_318126 |
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| Protein GI | 75675705 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.696907 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0197286 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGCTT TTTCAAGGTC GCCTGCGGAA TCGCTGTCAC CGGGTCGTCC GCTGACGCTC
GCGAATGTCG CGGAGGGCGC CGAGGGACTC GTCGTCTCTG ACCTCGCGCG AGCCATCAAG
GCCAACGCTA CGCGGCGAGC CGCGGCGGTC AGCCTGACGG TGGTCTGCCG TGACGGTCCG
CGGATGCAGC AACTGGCGCG GGCGCTCGAA TTTTTCGCGT CGGACATTTC CGTGATGCAA
TTCCCGGCCT GGGATTGCCA GCCCTATGAT CGGGTCTCGC CGCATGGAGG CGTGCTTGCG
CAGCGCCTGA CGACGCTGGC GCGCCTGTCT CGTCTAACCG GCAGCGAGAC GCCTCTGATC
ATCCTCACAA CGGTCAACGC GATCCTGCAA CGCGTGCCCG CGCGCGAAAT CGTCGCGTCT
CAAGCCCTGT CGGTCGCACC CGGCAATGTG GTTCCGATGG ATTCCATCGC CGCATGGCTC
GAGCACAACG GCTACAATCG CTCTTCAACG GTCCGCGAAC CCGGCGAATA CGCCGTTCGC
GGCGGCATCC TCGACCTGTT TCCGTCGAAT CTCGATCATC CCGTGCGATT CGATTTCTTC
GGCGACTCGC TGGAGTCGAT CCGGTCATTC GATCCGGAAA CCCAGCGCAC GCTGTTTGAC
GTACGCTCGC TCGATCTGGT GCCGATCTCC GAATTCCAGT TCGTCACCGA AACCATCCGG
CGTTTCCGGA TGGGATACGT CGCGACTTTC GGCGCACCGG AACGCGATGA CCTGTTGTAT
GAAGCTGTCA GCGAAGGGCG GCGGTATCCG GGCATGGAGC ACTGGCTGCC GCTGTTTCAC
GAACGCATGG ACACGCTGTT CGACTATCTT GACGGCGCAT CCATCGTCAT CGAGCCGCAG
GGAGAAGACG CCGCGAGCGA GCGCTTCAAG CAGATCGCCG ATTACCATGA AGCGCGCCGC
GAGCCCCTTG AGCAAGCCGG CGGCGGCGTG CCCTACAAGC CGCTTCCGCC CGACCGTCTT
TATCTGACGC CGGATGAGTG GGCAAAGCGC CTCAATGAAG CAGCTTTGGT GCGGTTGACG
CCATTCGCGA TGCCGGACGA ATCCGTCAAT ATCATCGATG CCGGCGCACG GCAGGGGCGG
AATTTCGCGC CCGAACGGGC TGACACCACT CTCAACGTTT TCGAGTCCGT CGGATCCCAC
ATACAGGCGT TGCAGGCCGC GCGAAAGAAA GTCGTCGTGA CGTTGTGGAG CGAGGGTTCG
CGCGACCGCA TGGCGAGCAT GCTGAAAGAT CACGGACTGC TCAACCTGAC GAGCATCAAT
ACCTGGCGTA CCGTTCACGC AACGCCCCGC AATGAGGTCA TGCTGGGCGT TGTCGGGATA
GAATCCGGAT TTGAAACTGA ATCTGTCGCG GTCATCAGCG AACAGGACAT CCTGGGCGAT
CGCCTGGTGC GGCCACCCAA GGCCAGCCGC AAACTCGAAA ACTTCATCTC GGAAGTCACC
AGCCTTGCGG CGGGCGATCT CGTTGTTCAC GTCGAGCACG GCATCGGGCG TTTTGTCGGC
TTGCAGACGC TTGAAGTAGG TGGCGCGCCG CACGATTGTC TGGAACTGCG TTACGCCAAC
GAGACCAAGC TGTTCCTGCC GGTCGAGAAT ATTGAACTGC TATCGCGCTA TGGCTCCGAT
CAAGCCAATG TCGAACTGGA CCGGCTCGGA GGCGGGGGCT GGCAGGCTCG CAAGGCCAAG
CTGAAAAGTC GCATTCGCGA GATCGCAGGC GAGTTGATCA GGATCGCCGC GGAGCGGCAT
TTGCGTGAGG CGCCGAAGCT GCCGGTGCAG TCGGGCCTGT ACGACGAGTT CTGCGCGCGC
TTTCCCTACG AGGAAACCGA GGACCAGCTC GGCGCGATCC AGGCTTCGCT GGAGGATCTC
GAAAGCGGCA AGCCGATGGA TCGGCTGGTG TGCGGTGACG TCGGATTCGG CAAAACCGAA
GTGGCCCTGC GGGCGGCATT CGCCGTCGCG CTGGATGGCA AGCAGGTCGC GGTCGTCGTG
CCGACAACGC TGCTTGCGCG TCAGCACGCG AAAACGTTCA CCGAGCGGTT TCGTGGTTTT
CCGGTCAATG TCGCGCAGGC CTCGCGACTG GTGTCGCCGA AGGAGCTGGC CAAGGTCAAG
AAGGGGATCG CCGACGGCTC GGTGGATATC GTCGTCGGCA CACATGCCTT GCTCGGCAAA
TCCATCAAGT TCAGGGACCT CGGACTTCTG GTGGTCGACG AAGAGCAGCA TTTCGGCGTC
AGCCACAAGG AGCGGCTGAA GCAACTGCGG GCGCATGTCC ACGTACTGAC GCTGAGCGCA
ACTCCGATTC CGCGCACGCT GCAACTGGCC CTGACCGGCG TGCGCGATCT ATCGATCATC
GCCTCGCCGC CGGTCGATCG CTTGGCCGTT CGTACCTTCG TGGCGCCCCA CGATCCCCTG
ATGATCCGGG AGGCGCTCCT GCGCGAACGC TACCGTGGTG GCCAGGCCTT CTATGTCGTG
CCGCGCGTAA GCGATCTGGC CGAGGTCAAG GATTTCCTCG ACAAGCACGT ACCGGAGATG
AAGGTCGCCG TCGCGCACGG CCAGATGCCG CCGACGGTAA TCGAGGACAT CATCTCGGCC
TTCTATGACG GCAAGTACGA TGTCCTGCTC TCGACAACCA TCGTGGAGTC CGGGCTCGAT
ATCCCGACCG CCAACACTCT CATCGTGCAT CGCTCGGATA TGTTCGGGCT GGCGCAGCTT
TATCAGTTGC GCGGCCGGGT CGGGCGTTCG AAGCTGCGCG CCTATGCGCT GTTCACGCTG
CCGTCGAAAC ACAAGATCAC GGCGCAGGCC GAACGCCGGC TCAAGGTTCT GCAGTCGCTC
GAAACCCTGG GGGCGGGATT CCAGCTTGCG TCGCATGATC TCGACATTCG CGGCGCGGGC
AATCTGCTCG GCGAGGAGCA GTCGGGCCAC ATCAAGGAAG TTGGTTTCGA ACTCTATCAG
TCGATGCTGG AGGAGGCGAT CGAGAATCTC AAGACCGGCG TGACGGAGAT TGCCGACGAT
CGCTGGTCCC CGCAGATCAC CATCGGGATG CCGGTATTGA TCCCCGAGGA TTACATTGCC
GATCTGGCGG TTCGGCTATC GTTGTATCGC CGGCTTGCCG ACCTCGATAC CGATGATGAA
ATCGACAGCT TTGCCGCGGA GCTGCGCGAC CGCTTCGGTA AATTGCCGGA CGAAGTCCGA
TATCTGTTCA AGGTCGCGGC CATCAAGGCC TATTGCCGCC GCGCCAATGT CGAGAAGGTG
GATGCGGGAC CGAAGGGTGC GGTCATTTCC TTCCGCGACA ACAAGTTCGC GCAACCCGAT
CGGCTGGTGT ATTTCATCCG CCAGCATGGA CAGGCGGCGA AGGTCCGTCC CGACATGAAA
GTGGTGTTCT TACAGAACTG GGAAACCCCG GAAGAGCGCC TGATGGGCAC CACCGAAATC
ATGCGGCAGC TTGCCAATCT CGCGGAGGAT CGCAAGGCGG CGTAA
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| Protein sequence | MKAFSRSPAE SLSPGRPLTL ANVAEGAEGL VVSDLARAIK ANATRRAAAV SLTVVCRDGP
RMQQLARALE FFASDISVMQ FPAWDCQPYD RVSPHGGVLA QRLTTLARLS RLTGSETPLI
ILTTVNAILQ RVPAREIVAS QALSVAPGNV VPMDSIAAWL EHNGYNRSST VREPGEYAVR
GGILDLFPSN LDHPVRFDFF GDSLESIRSF DPETQRTLFD VRSLDLVPIS EFQFVTETIR
RFRMGYVATF GAPERDDLLY EAVSEGRRYP GMEHWLPLFH ERMDTLFDYL DGASIVIEPQ
GEDAASERFK QIADYHEARR EPLEQAGGGV PYKPLPPDRL YLTPDEWAKR LNEAALVRLT
PFAMPDESVN IIDAGARQGR NFAPERADTT LNVFESVGSH IQALQAARKK VVVTLWSEGS
RDRMASMLKD HGLLNLTSIN TWRTVHATPR NEVMLGVVGI ESGFETESVA VISEQDILGD
RLVRPPKASR KLENFISEVT SLAAGDLVVH VEHGIGRFVG LQTLEVGGAP HDCLELRYAN
ETKLFLPVEN IELLSRYGSD QANVELDRLG GGGWQARKAK LKSRIREIAG ELIRIAAERH
LREAPKLPVQ SGLYDEFCAR FPYEETEDQL GAIQASLEDL ESGKPMDRLV CGDVGFGKTE
VALRAAFAVA LDGKQVAVVV PTTLLARQHA KTFTERFRGF PVNVAQASRL VSPKELAKVK
KGIADGSVDI VVGTHALLGK SIKFRDLGLL VVDEEQHFGV SHKERLKQLR AHVHVLTLSA
TPIPRTLQLA LTGVRDLSII ASPPVDRLAV RTFVAPHDPL MIREALLRER YRGGQAFYVV
PRVSDLAEVK DFLDKHVPEM KVAVAHGQMP PTVIEDIISA FYDGKYDVLL STTIVESGLD
IPTANTLIVH RSDMFGLAQL YQLRGRVGRS KLRAYALFTL PSKHKITAQA ERRLKVLQSL
ETLGAGFQLA SHDLDIRGAG NLLGEEQSGH IKEVGFELYQ SMLEEAIENL KTGVTEIADD
RWSPQITIGM PVLIPEDYIA DLAVRLSLYR RLADLDTDDE IDSFAAELRD RFGKLPDEVR
YLFKVAAIKA YCRRANVEKV DAGPKGAVIS FRDNKFAQPD RLVYFIRQHG QAAKVRPDMK
VVFLQNWETP EERLMGTTEI MRQLANLAED RKAA
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