| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nwi_1510 |
|---|
| Symbol | |
|---|
| ID | 3675913 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter winogradskyi Nb-255 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007406 |
|---|
| Strand | + |
|---|
| Start bp | 1638492 |
|---|
| End bp | 1640354 |
|---|
| Gene Length | 1863 bp |
|---|
| Protein Length | 620 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637713063 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_318123 |
|---|
| Protein GI | 75675702 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.14042 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0541168 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGCAAGT TCGAATCAAA ATGGACCCGG TATTGCCGGC CGCCGCGCGA GCGCTGCCGG
ACGGTGGTGG GTTTGGCGCT CATAGTCGGG CTGCTCGCCG CCGGGTACCA GGAGGTTTCC
GCGGCGGATT CCGGTTACGC CATCGCGATG CATGGCGAAC CGGCCCTGCC GCCTGATTTC
AGCCGGATGC CCTATGCCGA TCCGGACGCG CCCAAGGGTG GCCGGCTGGT TCAAAGTGTT
CCCGGTAGTT TCGACAGCCT CAATCCCTTC ATCGTCAAAG GCGTCGCGCT TCAGCAAATT
CGGGGTTTCG TGGTCGAGAG CCTGATGGCC CGTGGTCACG ACGAACCCTT CACGCTCTAC
GGTCTGCTGG CGGAAAGGAT TGAAACCGAC GATGCCCGCA CCTACGCCAC CTTTCATCTG
AATCCACAGG CGCGCTTTTA CGACGGGCGG TCCGTCCGTG CCGAAGACGT GCTCTTTTCC
TGGCAACTTC TCCGGGACAA GGGCCGACCC AACCATCGTC AGTATTATTC GAAGGTTGCG
ACGGCGGAGG CGATCGATGA GCGCACGGTG CGTTTCGATT TCGGGGGAAC CACGGATCGC
GAACTGCCCC TGATCCTCGG CCTGATGCCT GTTCTGCCGA AACATGCCGT CGATGCCGCC
ACTTTCGAGC AGACCTCGAT GACCGCCCCG CTGGGGTCCG GGCCGTATCG CGTGACCGCC
GTCAAGCCTG GAGCCAGCGT GACGCTGACG CGCAACCCGG ATTATTGGGG ACGCAACCTG
CCGGTCAATC GCGGCCTGTG GAACTTCGAC GAGATCAGGT TCGACTACTA CCGCGAAGCC
AACAGTCAGT TCGAGGCGTT CAAGCGCGGT CTGTATGACT TTCGTGTCGA GAGTGAACCA
CTGCGCTGGC ACGAAGGCTA CAACTTCCCG GCAGCGGGCG ATGGTCAGCT TGTCCGCGAA
GCTATTAAGA CCGGCCTGCC CGCGCCCTCG GAATATCTGG TGTTCAATAC GCGGCGGCCG
ATGTTTTCCG ACATTCGCGT TCGCGAGGCG CTGACGCTGC TGTTCGATTT CGAGTGGATC
AACCGAAACT ATTTTTTCGG ACTCTATAGT CGCGCCGGCG GCTTCTTCGC GGGATCGGAA
CTGTCCGCCT ACGCGCGCGC CGCCGCCGAC GGAGAGCGGT CGCTGCTGAA GCCGTTTCCA
TCGGCCGTGC GAAGCGATAT CCTCGACGGC AGCTACCGCC TTCCCGTGAC CGACGGTTCA
GGCCGGGACC GCGAAGCCTT ACGCGCCGCT CTCGCGCTTC TGTCGCAGGC AGGTTACGAG
TTTGACGGCA CGGTCCTGCG CCATCGCTCG ACCAAGGCTC CCCTTGCCTT TGAAATTCTG
GTGACGACCC GCGATCAGGA GCGGATCGCG CTAGCTTACG CGCGCGATCT CAAGCGCGCC
GGCATTGAGG TGTCCGTGCG CTCGGTCGAT GGCGTGCAGT TCGATCAGCG TCGGCTGGCG
TTTGATTTTG ACATGATCCA GAACCGCTGG GATCAATCGC TGTCGCCCGG CAACGAACAG
TCCTTCTACT GGGGCAGCGA AGCCGCCGAC ATTCCGGGCA CCCGCAATTA CATGGGCGTG
AAGAATCCCG CGATCGACGC CATGATCGCC GCCATGCTCA AGGCCAGGGA GCGGCCGGGC
TTCGTGGATG CGGTACGCGC GCTCGACCGG GTCCTGATGT CCGGATTTTA CGTGATTCCG
GTTTACAACG TTCGAGAACA ATGGATCGCG CGCTGGAATC GGATAGAACG ACCGGCAGCG
ACCGCGTTGA CTGGATACAT CCCTGAAACT TGGTGGCGAA GGCCGCCGAA GCCCGGCAAG
TGA
|
|---|
| Protein sequence | MSKFESKWTR YCRPPRERCR TVVGLALIVG LLAAGYQEVS AADSGYAIAM HGEPALPPDF
SRMPYADPDA PKGGRLVQSV PGSFDSLNPF IVKGVALQQI RGFVVESLMA RGHDEPFTLY
GLLAERIETD DARTYATFHL NPQARFYDGR SVRAEDVLFS WQLLRDKGRP NHRQYYSKVA
TAEAIDERTV RFDFGGTTDR ELPLILGLMP VLPKHAVDAA TFEQTSMTAP LGSGPYRVTA
VKPGASVTLT RNPDYWGRNL PVNRGLWNFD EIRFDYYREA NSQFEAFKRG LYDFRVESEP
LRWHEGYNFP AAGDGQLVRE AIKTGLPAPS EYLVFNTRRP MFSDIRVREA LTLLFDFEWI
NRNYFFGLYS RAGGFFAGSE LSAYARAAAD GERSLLKPFP SAVRSDILDG SYRLPVTDGS
GRDREALRAA LALLSQAGYE FDGTVLRHRS TKAPLAFEIL VTTRDQERIA LAYARDLKRA
GIEVSVRSVD GVQFDQRRLA FDFDMIQNRW DQSLSPGNEQ SFYWGSEAAD IPGTRNYMGV
KNPAIDAMIA AMLKARERPG FVDAVRALDR VLMSGFYVIP VYNVREQWIA RWNRIERPAA
TALTGYIPET WWRRPPKPGK
|
|---|
| |