| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nwi_1456 |
|---|
| Symbol | |
|---|
| ID | 3675195 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter winogradskyi Nb-255 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007406 |
|---|
| Strand | + |
|---|
| Start bp | 1586690 |
|---|
| End bp | 1587682 |
|---|
| Gene Length | 993 bp |
|---|
| Protein Length | 330 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637713008 |
|---|
| Product | secretion protein HlyD |
|---|
| Protein accession | YP_318069 |
|---|
| Protein GI | 75675648 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.134538 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCAAGA GATTCACGAT AATCATATTC GCCGTCGTGG TGCTTGCGGT CGCAGGGATC
GGCTATCGCA TGTTGGATCT GACAGACCCC GGTGTTCCCG CATTGCGTGA GGATCACGAT
CACACGATCC ATGAGTTCAA GCGGGGGCAT GTCGAGGAGG ATGAGCATGG CGCCAAGCGC
ATCCTGATCA GCGACGTCAA ACTCGCGGCC GCCGGGGCGG TGCTTGCCGA GGCCGGAGAG
GTCACGCTCA GCGACACGCT ATCGTTCAAC GGCGTGTTGC GGGCCAATCA GGAGACTGTG
GTTCAGGTCA CGCCGCGGTT TCCGGGCATC GTCCGGTCGA TCAGGAAAAG GATCGGGGAC
ACCGTCGCAG GTAACGACCT GCTTGCATCG ATCGAAAGCA ACCAGAGTCT CACCGTTTAC
GATCTGAAAG CGCCGATCAG CGGGACCGTG ATCGATCGCC AGATATCGCT CGGCGAGTAT
GCCTCGGAAC AGAAGCCTGC CTTCGTGGTC GCGGACCTGT CGACGATCTG GGTCGACCTT
TCGATCTATC GTCAGGACCT GAAACGGGTT CGAACCGGTG ATGAAGTGCT GATCGATCCG
GATGACGGCG GCGCGGACAT CAAGGGGCAC ATCTCTTATG TCGCGCCGAT CGGATCAATC
GACACGCAGA CCGCGATCGC CCGGATCGTC CTGACCAACA CCGATGGGCG CCTGCGTCCC
GGACTGTTCG TCACGGCCAG GCTTGTCCTG ACAAAACGCA GCGTACCGGT TGCCGTTCGC
GCGGGAGCGA TCCAGATGCT GGACAATAAG ACGGTCGTGT TCGTTCGGGA GGACCAAGAC
AAGATCGAGG CTCGTCCGGT CGTGGTCGGA GAATCTGATG CGAGGTTCGT GGAGATTCGA
GCCGGCATGG TGGCGGGAGA GCCCTATGTC GCCGAAAACA GCTTCGTTGT GAAAGCGGAG
ATGGGGAAGG GCGAGGGCGA GCATGATCAT TGA
|
|---|
| Protein sequence | MIKRFTIIIF AVVVLAVAGI GYRMLDLTDP GVPALREDHD HTIHEFKRGH VEEDEHGAKR
ILISDVKLAA AGAVLAEAGE VTLSDTLSFN GVLRANQETV VQVTPRFPGI VRSIRKRIGD
TVAGNDLLAS IESNQSLTVY DLKAPISGTV IDRQISLGEY ASEQKPAFVV ADLSTIWVDL
SIYRQDLKRV RTGDEVLIDP DDGGADIKGH ISYVAPIGSI DTQTAIARIV LTNTDGRLRP
GLFVTARLVL TKRSVPVAVR AGAIQMLDNK TVVFVREDQD KIEARPVVVG ESDARFVEIR
AGMVAGEPYV AENSFVVKAE MGKGEGEHDH
|
|---|
| |