| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nwi_1436 |
|---|
| Symbol | valS |
|---|
| ID | 3677178 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter winogradskyi Nb-255 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007406 |
|---|
| Strand | + |
|---|
| Start bp | 1562869 |
|---|
| End bp | 1565727 |
|---|
| Gene Length | 2859 bp |
|---|
| Protein Length | 952 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637712988 |
|---|
| Product | valyl-tRNA synthetase |
|---|
| Protein accession | YP_318049 |
|---|
| Protein GI | 75675628 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0525] Valyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00422] valyl-tRNA synthetase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.571959 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGAAA AAACCTATCA GCCATCCGAT ATTGAAAGTC GCATGTCCCG CGTTTGGGAA
GAGGCCGGCG CGTTCAAGGC CGGCCGGCCC GAACGCCGCG AGGCTGAGCC GTTCACGATC
GTCATCCCGC CGCCGAACGT CACCGGCTCG TTGCACATGG GGCACGCGCT GAACAACACC
TTGCAGGATG TGCTGTGCCG CTTCGAGCGG ATGCGCGGCC GCGACGTGCT ATGGCAGCCA
GGCACAGATC ATGCCGGCAT CGCGACCCAG ATGGTTGTGG AGCGGCAGTT GATGGAACGG
AAGGAGCCCG GCCGCCGCGA GATGGGCCGC GCCAGGTTTC TTGAACGAGT CTGGCAATGG
AAAGCGGAGA GCGGCGGCGT TATCGTCAAC CAGTTGAAAC GGCTGGGAGC GTCCTGCGAT
TGGTCGCGTG AGCGTTTCAC CATGGACGAA GGGCTGTCAC GCGCGGTCGC CAAGGTTTTC
GTCGAGCTGC ATCGCGCCGG CCTGATCTAC AAGGACAAGC GGCTGGTCAA TTGGGATCCG
AAACTGCTCA CCGCGATCTC CGATCTCGAG GTGAAACAGG TCGAGGTGAA AGGCAGCTTG
TGGCATCTGC GCTATCCGAT CGAGGGCAAG GCTTTCGACC CGAGCGATCC CTCGACCTAT
ATCGTCGTCG CCACCACGCG GCCGGAGACC ATGCTGGGCG ATACGGCTGT CGCGGTGCAT
CCGGAGAACG CGAAGCTCGA ATACCTGATC GGCAGCAATG TCGTGCTGCC TTTGGCCGGC
AGGATCATTC CGATTGTCGG CGACGACTAT GCCGATCCGG AGAAGGGCAC CGGCGCGGTC
AAAATCACCC CGGCTCATGA TTTCAACGAC TTCGAGGTCG GTAGGCGCCA CCACCTGCCG
CAGATCAGCG TGCTCGATCG CGAGGGACGG CTGACGCTAT CCGAGAACGA GGATTTCCTG
CGCGGCCTTC CGTCGGGCGC GTTGATGCTG GCTGAGGAAT TCGACGGCAT GGATCGCTTC
GCCGCGCGCA AGGCGATCGT GGCGCGTCTC GAAGAGTTCG GCTTTCTCGA CAAGATCGAG
CCGCATACGC ACATGGTGCC GCATGGCGAC CGCTCCAACG CCGTCGTCGA GCCCTACCTG
ACCGACCAGT GGTACGTCGA CGCCAAGGAA CTGGCGCGGC CGGCAATGGC CGCCGTGCGT
TCCGGCGAAA CGGCGTTCGT GCCGAAGAAC TGGGAGAAGA CCTATTTCGA GTGGATGGAG
AACATCCAAC CCTGGTGTAT CTCGCGGCAG CTCTGGTGGG GTCATCAGAT TCCGGCCTGG
TACGGGCCCG ACGGAAAGGT GTTCGTCGCG GAAACGGAGG ACGAGGCGAT CGGCCATGCG
CTCGGCTATT ACGTCGAGCA GGGCGTGATT ACGGCGGAGC AGGGCGCCGG GATGGCGCGC
GATCCGGCGA AGCGTGATGG CTTCATCACG CGAGACGAAG ACGTGCTCGA CACCTGGTTT
TCATCGGCGT TGTGGCCGTT CTCGACGCTC GGCTGGCCGG ACGAGACGCC GGAGGTGAGG
CGTTACTATC CGACCAACGT GCTCGTCACC GGCTTCGATA TCATCTTCTT CTGGGTTGCC
CGAATGATGA TGATGGGCAT CCACTTCATG AAAGAAGCCC CGTTCTCGAC GGTCTACATC
CACGCGCTCG TTCGCGACGA GAAGGGCGCC AAGATGTCGA AGTCGAAGGG CAACGTCATT
GATCCCCTTA ATCTGGTCGA TAAGTACGGC GCGGATGCGC TGCGCTTTAC GCTCGCCGCG
ATGGCGGTGC AGGGCCGCGA CATCAAGCTC TCTCCGCAGA GGGTCGAAGG CTATCGCAAT
TTCGCGACCA AGTTCTGGAA CGCGTGCCGT TTCGCGGAGA TGAACGATTG TGTCGTTCCC
GCCCGGTTCG ATCCGACCGC GGCGACGGAG ACACTGAACC GATGGATCGT TCATGAGACC
GCGCGTACGG CGTGCGAGGT CACCGAGGCC ATTGAATCCT CTCGCTTCAA TGACGCCGCA
AGCGCGATCT ACCGCTTTGT CTGGAACGTC TATTGCGACT GGTATCTTGA GCTCGCGAAG
CCCGTCATTC TGGGTGAGGA CAGCCCCGCC AAGTCCGAGA CACGCGCGAT GGTCGCCTGG
GCGCGCGATG AAATCCTGAA GCTTCTCCAT CCGTTCATGC CGTTCATTAC GGAGGAGTTA
TGGGCGGTGA CGGCGGAGCG GACGCGACTG CTGACCCTGA CGGAGTGGCC CAACAAGGCC
GATCAGACCC GCAAACGGCG GACGTTGATC GCGGCCGCCG ACCCCTTCAT CGGGTCGGAG
CCGATAACCG ATCTGCTGGA GCCCTACTTC CGCGACGATG CCGCCGAAGC CGAGATCGGC
TGGGTGGTCG ATCTCGTCAC GGCGATCCGC TCCGTCCGCG CGGAGATGAA TATTCCGCCT
GCAACCCTGG CGCCGCTGGT GCTGGCTGGC GCGTCCGACG AGAGCAGGGC GCGGGCGCAG
CGCTGGAGCG ATGTCATCAA GCGGATGTCC CGGCTTGCGG ATATCTCGTT CGCGGACCAG
GCGCCGGCGG GCGCCGTGCA ACTGCTGATC CGTGGCGAAG TCGCCGCGCT GCCGTTGAAA
GGCATCGTTG ACGTCGCCGC CCAGCGTACG CGTCTGGGGA AGGAAATCGC TAAGGCTGAC
GCCGACATCG CTCGCGTCGA TCTCAAGCTC GCGGATCAGA ATTTCATCGC CAACGCGCCC
GGAGAAATCG TCGAGGACGA AAAAGAAAAG CGGGAAGCAG CGGCCGCTCG CAAGGCGAAG
TTCGTCGAGG CGCTGGAGCG TTTGAAGGCC GCTGAGTGA
|
|---|
| Protein sequence | MIEKTYQPSD IESRMSRVWE EAGAFKAGRP ERREAEPFTI VIPPPNVTGS LHMGHALNNT
LQDVLCRFER MRGRDVLWQP GTDHAGIATQ MVVERQLMER KEPGRREMGR ARFLERVWQW
KAESGGVIVN QLKRLGASCD WSRERFTMDE GLSRAVAKVF VELHRAGLIY KDKRLVNWDP
KLLTAISDLE VKQVEVKGSL WHLRYPIEGK AFDPSDPSTY IVVATTRPET MLGDTAVAVH
PENAKLEYLI GSNVVLPLAG RIIPIVGDDY ADPEKGTGAV KITPAHDFND FEVGRRHHLP
QISVLDREGR LTLSENEDFL RGLPSGALML AEEFDGMDRF AARKAIVARL EEFGFLDKIE
PHTHMVPHGD RSNAVVEPYL TDQWYVDAKE LARPAMAAVR SGETAFVPKN WEKTYFEWME
NIQPWCISRQ LWWGHQIPAW YGPDGKVFVA ETEDEAIGHA LGYYVEQGVI TAEQGAGMAR
DPAKRDGFIT RDEDVLDTWF SSALWPFSTL GWPDETPEVR RYYPTNVLVT GFDIIFFWVA
RMMMMGIHFM KEAPFSTVYI HALVRDEKGA KMSKSKGNVI DPLNLVDKYG ADALRFTLAA
MAVQGRDIKL SPQRVEGYRN FATKFWNACR FAEMNDCVVP ARFDPTAATE TLNRWIVHET
ARTACEVTEA IESSRFNDAA SAIYRFVWNV YCDWYLELAK PVILGEDSPA KSETRAMVAW
ARDEILKLLH PFMPFITEEL WAVTAERTRL LTLTEWPNKA DQTRKRRTLI AAADPFIGSE
PITDLLEPYF RDDAAEAEIG WVVDLVTAIR SVRAEMNIPP ATLAPLVLAG ASDESRARAQ
RWSDVIKRMS RLADISFADQ APAGAVQLLI RGEVAALPLK GIVDVAAQRT RLGKEIAKAD
ADIARVDLKL ADQNFIANAP GEIVEDEKEK REAAAARKAK FVEALERLKA AE
|
|---|
| |