| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nwi_1217 |
|---|
| Symbol | |
|---|
| ID | 3675676 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter winogradskyi Nb-255 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007406 |
|---|
| Strand | - |
|---|
| Start bp | 1337810 |
|---|
| End bp | 1339420 |
|---|
| Gene Length | 1611 bp |
|---|
| Protein Length | 536 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637712767 |
|---|
| Product | TRAP C4-dicarboxylate transport system permease DctM subunit |
|---|
| Protein accession | YP_317831 |
|---|
| Protein GI | 75675410 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG4664] TRAP-type mannitol/chloroaromatic compound transport system, large permease component |
|---|
| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTACGC TGGAAATGAT GCCGCCAATG ATGTTCGGCG GCCTGGTTCT GGCGATGTTG
ATCGGTTTTC CCGTCGCCTT CACGCTGGCC GCGGTGGGGC TCTCGTTCGG ATTCCTTGCG
ATCCATCTTG GCTTCTTCGA CCTTAATTTC CTTCAGGCCA TACCGGGGCG CGTGTTCGGA
GGCGTGCTAT CGAACGAGCT GCTGCTCGCG ATTCCTTTTT TCACGTTCAT GGGATCGGTA
CTCGAGCGCT GCGGCCTCGC GGAAGACATG CTCGACTCGA TGGGCCAACT GTTTGGACCC
ATCCGCGGCG GTCTCGGATA TTCGGTCATC CTTGTCGGAT TCATCCTCGG CGCCATCACC
GGCACGGTCG CCGCGCAGGT GATCGCCATG GCGCTGATCT CGATGCCCGT GATGATGCGC
TACGGCTACA ACATTCGCTA CGTCACGGGC GTGCTGGCGG CATCCGGCAC CATCACTCAA
CTCGTTCCGC CCTCCCTGGT GCTGATCGTC CTGGCCGATC AACTCGGGAA ATCGGTCGGC
GACATGTATC TCGGCGCCTG GGGACCGTCG CTGTTCCAGA TCATGCTGTT CGCCGGATAC
ACTTTCCTGC TCGGTATCTT CAAGCCCGAT CACGTCCCCC CGGTGCCAAA GGAATTTCGC
ACGCTCACCG GCTGGCCGCT TTGGCGCAAG TGCCTGATGG GCATCATTCC CTCCGCCGTC
CTGATCTTCG TCGTGCTAGG CACCATGATG CTGGGGCTTG CGACACCCAC GGAAGCAGGC
GCGATGGGCG CCGTCGGCGC GATCGTGCTG GCGACCATTC ACCACAAGGA TTTCAGCAGT
ACCGGCCGAA AACTCCTGAT CATCGGCGCC ATCACCGGCG GCATCGGAAC GCTCGTCGGA
ATTTTCGTGG CTGAGGGATT GGTCTTCAAG ATCGCATTCG CCGTTACCTA TCTCGCGGTG
GTGTGGATTT GTCTGGAGGC CGTCCGCATC CCCGGACTTC GCGACCTCAT CCGGCAGGGC
TATCAATCGA CAATGCGCCT CACCACCATG GTGACCTTCA TTCTGATCGG TTCGACCTGC
TTCTCGGTGG TGTTTCTCGG AGTCTCCGGC GGTGAATGGC TGGAGCATCT GCTGACATCG
CTGCCGGGCG GCGTATGGGG TTTTCTCATC TTCATCAACG CGTTCATCTT CTTCCTGGCG
TTCTTCCTCG ATTTCTTCGA GATTGCCTTC ATCATTCTAC CGATGCTCGC TCCGGTGGCC
CAGAAAGTTC TCGCTCCCGT CGTCGGCGCA GACGCAGCGC TGATCTGGTT CGGCGTCATG
ATCTGCGTCA ACATGCAGAC CTCGTTCCTC CACCCTCCAT TCGGTTTTGC GCTGTTCTAC
CTGCGCGGCG TCGCCCCGCG AGAGGTCAAG AGTTCAGACA TTTACTGGGG CGCGGTGCCA
TGGATTGGAT TGCAGATCAT CATGGTCATT CTCGTGATCG CGTTCCCCGC GACAGTGACA
GGTCTGCTTG GCAAATCGAC AACCGTCGAC CTCGACAATA TCAAGATCGA GGTTCCGATG
ATCGATGTCG CGCCACTCGA TTTCGGTCCG GTACCGACCA ATCGGCAATA G
|
|---|
| Protein sequence | MITLEMMPPM MFGGLVLAML IGFPVAFTLA AVGLSFGFLA IHLGFFDLNF LQAIPGRVFG
GVLSNELLLA IPFFTFMGSV LERCGLAEDM LDSMGQLFGP IRGGLGYSVI LVGFILGAIT
GTVAAQVIAM ALISMPVMMR YGYNIRYVTG VLAASGTITQ LVPPSLVLIV LADQLGKSVG
DMYLGAWGPS LFQIMLFAGY TFLLGIFKPD HVPPVPKEFR TLTGWPLWRK CLMGIIPSAV
LIFVVLGTMM LGLATPTEAG AMGAVGAIVL ATIHHKDFSS TGRKLLIIGA ITGGIGTLVG
IFVAEGLVFK IAFAVTYLAV VWICLEAVRI PGLRDLIRQG YQSTMRLTTM VTFILIGSTC
FSVVFLGVSG GEWLEHLLTS LPGGVWGFLI FINAFIFFLA FFLDFFEIAF IILPMLAPVA
QKVLAPVVGA DAALIWFGVM ICVNMQTSFL HPPFGFALFY LRGVAPREVK SSDIYWGAVP
WIGLQIIMVI LVIAFPATVT GLLGKSTTVD LDNIKIEVPM IDVAPLDFGP VPTNRQ
|
|---|
| |