Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Nwi_1208 |
Symbol | |
ID | 3675667 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nitrobacter winogradskyi Nb-255 |
Kingdom | Bacteria |
Replicon accession | NC_007406 |
Strand | - |
Start bp | 1323506 |
End bp | 1326790 |
Gene Length | 3285 bp |
Protein Length | 1094 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 637712758 |
Product | alpha amylase |
Protein accession | YP_317822 |
Protein GI | 75675401 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0366] Glycosidases [COG3281] Uncharacterized protein, probably involved in trehalose biosynthesis |
TIGRFAM ID | [TIGR02456] trehalose synthase [TIGR02457] trehalose synthase-fused probable maltokinase |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATGAAA TGTCGCATAT CGATGCTGAT AGATACGTCC AGACCGACGA TCTCTGGTAC AAGGACGCTA TTATCTATCA GCTTCACGTC AAGGCATTCG CCGACAGCAA CAACGACGGA ATCGGTGACT TCGTCGGTCT CACCAACAAG CTCGACTACC TTCAGGAACT CGGCGTCACC GCGCTGTGGC TGTTGCCGTT CTATCCATCG CCGGGGCGCG ACGACGGATA CGACATTGCG GATTACGGCT CTGTCAATCC CGATTTCGGC ACCATGAAGG ACTTTCGCCG ATTCATCTCG GAAGCAAAAC GACGCGGCCT GCGCGTGATT ACCGAGCTCG TGATCAATCA TACGTCCGAT CAGCACAGAT GGTTCAAACG TGCCCAGCGA AGTCCTGCCG GATCAAGCGC GCGCAACTGG TATGTCTGGA GCAACACAGA CAAGAAGTAT CAGGGAACCC GGATCATCTT CACCGACACC GAGAAATCAA ACTGGGCCTG GGATTCCGAA GCCAACGCCT ACTATTGGCA TCGCTTCTTC AGTCATCAAC CAGACCTGAA CTTCGACAAC CCTCGCGTCG TCAGAGCTGT CATTCAGGTG ATGAAAAGAT GGCTCGACAC TGGCGTCGAC GGGTTTCGAC TGGATGCAAT TCCGTATCTT TGCGAGCGCG AGGGAACCAA CAACGAGAAT CTTCCCGAAA CCCATGCGGT GATCAAACAT ATCCGAGCAG CGCTTGATTC TTACGCCAAG GGAAAGGTTC TTCTCGCCGA GGCCAACCAA TGGCCGGAGG ATGTTCAGTT CTATTTCGGG GACGGCGATG AGTGCCACAT GGCCTATCAC TTCCCCTTGA TGCCGCGCAT CTACATGGCG ATCGCCCAGG AAGACCGCTT TCCGATCACA GACATTCTGA GGCAGACGCC CGACATTCCC GACAACTGTC AATGGGCGAT GTTTCTACGA AACCATGACG AGCTGACGCT CGAAATGGTG ACCGATATCG AGCGCGACTA TCTATGGTCG ACCTATGCAG CGGATCCTCG TGCGCGCATC AACCTCGGCA TTCGGCGCCG CCTCGCTCCG TTGATGGATA ACGACCGCCG CAAGATCGAG CTGATGAACT CATTGTTGAT GTCGCTTCCG GGAACGCCGA TCATCTACTA CGGCGACGAG ATCGGAATGG GTGACAACAT CTACCTGGGC GACCGCAACG GCGTACGCAC TCCGATGCAA TGGACTTCGG ATCGCAACGG TGGATTTTCT CGATGCGATC CCGCGCGGCT TTATGCGCCT CCCGTCATGG ACGCCGTCTA CGGCTATGAG TCCGTGAATG TCGAATCGCA ATCGCGAAGT CTGTCCTCAT TACTGAGCTG GATGAAGAAG CTGATTTCGG TGCGAAAATC CAGTCACGTT TTCGGCCGGG GAACGATGGC CTTCGTTCGT TCGTCGAATC GCAGCGTTCT CGCTTATCTG AGGCAGCATG GCGACGAGGC CGTACTCTGC GTCGCCAATC TGTCGCGATC CGCGCAGGCT TCCGAACTCG ATCTATCGCA TTGGAAAGGC CGCTCGCCTC TTGAAATGCT GGGACGGACG ACCTTTCCCG ATATTGGCGA ACTTCCGTAC CTGATCACGC TCGCACCCTA TGGATTCTAC TGGTTCCGCC TGAATGAAAA GCCACCGTCT CCGAACGTCG CTGCCGTGAT CGTGCCGGAC TATGAGACGC TCGTCGTGCC CCAGGGTGCG ACCTGGATGT CGCTGGCGCG GACACGCTCG ATCTTCGAGC GTGATGTTCT GCCATCTCAT CTCGCCCGCT CGCGCTGGTT CCCCGAGCGA TCCGCCGGCG CAATCACCGC GCGCGTGCCG GCGGCGATAC CGCTCACGAA AGACCAGGTT TCAAGGCCAT GGCTGTCGAT CTTCGACGTC ACCCATCGCG GACAGACAGG GCGATATGCG ATGCCGATCC AAATCAGGTG GGATCGGCTC GATCGCAAGA ACTATGACGC TAGAAACGTT GCCGCTGTGC GGCAAGGCTC GCGGGAGGGA ACGCTGATCG ACGCCGCCTA TGAGAGCGGC CTGATCACGG GCATCATCGA AGGTCTGCGT CAACGTGCGA CCTTCGAGGG AGGTAACTTA CAGATCTCTT ACATTCCCAC GGAGCGGCTG GCCTCGATCA CGGAGGAACC GATCGAGAAC GTGAGACCGG TTCAAACCGA ACAGTCGAAC AGCACGGCGC TGGTGGATCA GAAGTTTGTG GTCAAGCTTT ACCGAAAGCT TGAGAATGGC ATCAATCCTG AAGTGGAGGT GGGACGTTTT CTGACTGATG TGGCCGGATA TGCCAATACG CCCGCCTTGC TCGGCAGCGT CGAACTGACG GGACCTGATG TCCATGCCGC CGTCGCTATT GTCCATGCTT TCGTCGGCAA CCAGGGGGAC GCATGGACCA TCAGCAGCGC CGCGCTGGAC CGTTTCATCG ACGAGCAACG GCTTGTCGGC GCGATCGATA CCGCTCCGGC GCTTGAGGAG AAAGCAGCCT ATCAGCGCTA CATGATGCAG CTCGGCAAGC GTGTCGCGGA GATGCATGTG GCGCTGGCCA GCCGTGGTGA TATCGAGGAT TTTCGTCCCG AGCCAGTAAA CGCGTCGGAT GTCGCGCATT TTATCGATCG CCTTACGGCA CGCGCGGAGA AGACGTTTGA CCGCCTGGCT CAAGCCAGGC TTTCGGAATC GGATCGGATT CTCGTCGAAG AGATCCAGAG TCTCCGTCCA GCCCTGCATG GTTTACTCGC CGGGCTGCTG CCGTCATCGA TTCAGATGTA CAGTATTCGG CATCACGGTG ACTTTCATCT CGGACAGGTT CTCGTCGTTC GCGACGACGT CTTTATTATC GACTTCGAAG GCGAACCGCG GCGAAGTCTT TCTGAGCGGC GCATGAAGGC GCCGGCGGCT CGTGACGTCG CAGGGCTGAT CAGATCCATC GATTATTCCG TGACCTCGGC GCAACAACGC GTTCTGAAAA CCGAGGTGGA CGACGATGGA CGACTGGCAG AGGCCTTATC AGCATGGCGC GACGAGGCGA CGCAGACTTT TCTGATCGCC TATCGTGAAG CAATGTCCGA TTCTCGACTA TGGCCGCAGG ATAACGACGA GAGCGAAGGG ATGCTGCGAT TTTTCCTGCT CGAGAAGGCC CTTTATGAGA TCGACTACGA GTTGGCGCAT CGGCCGGATT GGCTACGTGT CGCGCTGGAT GGCGCATTAC GGGTACTGCG CAACGATAAA CGAGATCGTG CATGA
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Protein sequence | MNEMSHIDAD RYVQTDDLWY KDAIIYQLHV KAFADSNNDG IGDFVGLTNK LDYLQELGVT ALWLLPFYPS PGRDDGYDIA DYGSVNPDFG TMKDFRRFIS EAKRRGLRVI TELVINHTSD QHRWFKRAQR SPAGSSARNW YVWSNTDKKY QGTRIIFTDT EKSNWAWDSE ANAYYWHRFF SHQPDLNFDN PRVVRAVIQV MKRWLDTGVD GFRLDAIPYL CEREGTNNEN LPETHAVIKH IRAALDSYAK GKVLLAEANQ WPEDVQFYFG DGDECHMAYH FPLMPRIYMA IAQEDRFPIT DILRQTPDIP DNCQWAMFLR NHDELTLEMV TDIERDYLWS TYAADPRARI NLGIRRRLAP LMDNDRRKIE LMNSLLMSLP GTPIIYYGDE IGMGDNIYLG DRNGVRTPMQ WTSDRNGGFS RCDPARLYAP PVMDAVYGYE SVNVESQSRS LSSLLSWMKK LISVRKSSHV FGRGTMAFVR SSNRSVLAYL RQHGDEAVLC VANLSRSAQA SELDLSHWKG RSPLEMLGRT TFPDIGELPY LITLAPYGFY WFRLNEKPPS PNVAAVIVPD YETLVVPQGA TWMSLARTRS IFERDVLPSH LARSRWFPER SAGAITARVP AAIPLTKDQV SRPWLSIFDV THRGQTGRYA MPIQIRWDRL DRKNYDARNV AAVRQGSREG TLIDAAYESG LITGIIEGLR QRATFEGGNL QISYIPTERL ASITEEPIEN VRPVQTEQSN STALVDQKFV VKLYRKLENG INPEVEVGRF LTDVAGYANT PALLGSVELT GPDVHAAVAI VHAFVGNQGD AWTISSAALD RFIDEQRLVG AIDTAPALEE KAAYQRYMMQ LGKRVAEMHV ALASRGDIED FRPEPVNASD VAHFIDRLTA RAEKTFDRLA QARLSESDRI LVEEIQSLRP ALHGLLAGLL PSSIQMYSIR HHGDFHLGQV LVVRDDVFII DFEGEPRRSL SERRMKAPAA RDVAGLIRSI DYSVTSAQQR VLKTEVDDDG RLAEALSAWR DEATQTFLIA YREAMSDSRL WPQDNDESEG MLRFFLLEKA LYEIDYELAH RPDWLRVALD GALRVLRNDK RDRA
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