| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nwi_0395 |
|---|
| Symbol | |
|---|
| ID | 3676980 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter winogradskyi Nb-255 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007406 |
|---|
| Strand | + |
|---|
| Start bp | 442655 |
|---|
| End bp | 443299 |
|---|
| Gene Length | 645 bp |
|---|
| Protein Length | 214 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637711935 |
|---|
| Product | shikimate kinase |
|---|
| Protein accession | YP_317014 |
|---|
| Protein GI | 75674593 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0703] Shikimate kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.505891 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGACGTCCG AAACCGTTTC ACCGTCCAGC TTCGGAGCAT CCCCCGAGAC CGCCGTTGTC
GCGGCGCTCG CGGGGCGGTC GCTGGCGCTG GTCGGCATGA TGGGAGCCGG CAAGTCCACC
ATCGGACGCC GGCTGGCGGC GCGCCTCAGG ATGCGATTCG TCGATGCCGA CGCCGAAATC
GAACTCGCGG CCGGAATGCC GATTCCCGAA ATCTTCGAAA CCCACGGCGA GCCCCATTTC
CGGGATGGCG AGGCGCGCGT GATCGCACGG TTGCTGAATG GCGGCCCGAT CGTGCTCGCA
ACAGGCGGCG GCGCCGTGCT GCGCGAGGAG ACCCGGGCAC GCCTCTCAGA ACGGGCGGTC
TCGATCTGGC TGAAGGCGGA CGCCGAGGTG ATTCTGCGCC GGGTCAGGCG CCGCGCCGAC
AGACCCTTGC TGCAAACGGC CGATCCCGCC GCGACGATCA AGCGCCTTAT CGCCGAGCGC
GAGCCGATCT ATCGACAGGC GGATATCACG GTCGCCTCGC GCGACGTGCC GTATGAATGG
ATCGTCGATG AATGCATCGG CCTGCTTCAT CGCAGGCTTT GCCGCGGCGA AATGACTCGA
AATGCGATGA AAGACCCTGA CGAGGGATTT GACACCACGC AATGA
|
|---|
| Protein sequence | MTSETVSPSS FGASPETAVV AALAGRSLAL VGMMGAGKST IGRRLAARLR MRFVDADAEI
ELAAGMPIPE IFETHGEPHF RDGEARVIAR LLNGGPIVLA TGGGAVLREE TRARLSERAV
SIWLKADAEV ILRRVRRRAD RPLLQTADPA ATIKRLIAER EPIYRQADIT VASRDVPYEW
IVDECIGLLH RRLCRGEMTR NAMKDPDEGF DTTQ
|
|---|
| |