| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nwi_0301 |
|---|
| Symbol | |
|---|
| ID | 3676130 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter winogradskyi Nb-255 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007406 |
|---|
| Strand | - |
|---|
| Start bp | 342198 |
|---|
| End bp | 343679 |
|---|
| Gene Length | 1482 bp |
|---|
| Protein Length | 493 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637711841 |
|---|
| Product | type II and III secretion system protein |
|---|
| Protein accession | YP_316920 |
|---|
| Protein GI | 75674499 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4964] Flp pilus assembly protein, secretin CpaC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAATGGA CGACAAAACC CACATCAGTG CGGGCCTTTG TGGCGCGGTC GCTCGCCTTC
GCGGCAATCG GCGCTTTCAC GCTGGACGCG GCGCTGACGC CGGTGTTCGC GAGCGATTAC
CGCGTATCCG GTGCTGCAAC CGCTGGCGCG AACATGCACG CGCAATCGCT TTCGCTCGGC
ATCGGCAAGT CTGTCGTGGT GGACCTGCCC CGCGACGTGA AGGATGTCCT GGTCGCCGAC
CCGAAGATCG CAAACGCCGT GGTGAGGTCG GCGCAGCGCG CCTACATCAT CGGCGCGGCG
GTCGGTCAAA CCAACATCAT CTTCTTTGAC AGCAGCGGCC AGCAGATTTC GGCTTACGAT
ATCGCGGTGA CGCGCGACCT GAACGGCTTG CGCACCGCGC TCAAGCAGCT GCTGCCGAAC
GCCGCCATCA AGGTCGATGG CCTGGGCGAC GGCGTCATGC TCTCCGGATG GGTATCGAAC
CCGATCGAGG CGCAACAGGC CGGCGATCTC GCCGCGCGCC TCACCGATGG CGCACAAAAG
GTCGTCAACA ACATCGCCGT GCGGGGCCGC GACCAGGTCA TGCTCAAGGT CACGGTGGCC
GAGGTCGCGC GCACCGTCAT CAAGCAGATG GGAATCGATC TCAGCGCCAG CATGAACTAC
GGCACCGCGG TCGTGAATTT CACCAACGCA AATCCGTTCA CCGCTCTCGG ACGGCCGCTG
ACGAACAACA GCGCGGCGGC GTCATTCGGC TCGACGATGG TCGGCGGCGC CCCTGTGCCC
GCGGTCACCG CGACGCTCCG GGCGATGGAA AGCGCCGGCG TGATCCGGAC GCTCGCCGAG
CCGAACCTCA CCGCGATATC GGGTGAGTCG GCGACGTTCA TCTCGGGCGG CGAGTTTCCC
ATCCCAGCCG GCTTTTCATG CGATCCCGCC ACCCGGGTCT GCCTGACGCA GATCAGATTC
AAGAAGTTCG GCATCTCGCT GAATTTCACG CCGGTGGTGC TGACCGAGGG CCGGATCAGC
CTGAGAGTGA TGACCGAGGT CTCGGAGCTG TCGAACGAGA ACTCGATGAC GCTGAACCAG
TCAGTCGGCA ACTCGCTCAC CGTGCCCTCG ATAAGAACCC GGCGCGCGGA AACGACACTG
GAGATTCCGT CCGGCGGTTC GATGGCCATG GCAGGACTGA TCCATCAGCA GACCAAGCAG
GTCATCAACG GATTGCCGGG CATCGCCCAG GTGCCGGTCC TTGGAGCGTT GTTCCGCAGC
CGCGACTATG TCAACGGCCA GACCGAGCTG ATGGTTCTTG TGACTCCTTA CGTGGTGCGC
GCCGTCGCGC AGAAGGATCT GTCGCGACCC GATGACGGCT TCGCCGATGC ATCCGATCCG
CAATCCGACC TCCTCGGCAG CCTCAACCGC ATCTACGGCG CTCCGGGTCG CGTCGAGCCG
GCGCGTCACT ATCGCGGCAC CTACGGCTTT ATCACCGACT GA
|
|---|
| Protein sequence | MEWTTKPTSV RAFVARSLAF AAIGAFTLDA ALTPVFASDY RVSGAATAGA NMHAQSLSLG
IGKSVVVDLP RDVKDVLVAD PKIANAVVRS AQRAYIIGAA VGQTNIIFFD SSGQQISAYD
IAVTRDLNGL RTALKQLLPN AAIKVDGLGD GVMLSGWVSN PIEAQQAGDL AARLTDGAQK
VVNNIAVRGR DQVMLKVTVA EVARTVIKQM GIDLSASMNY GTAVVNFTNA NPFTALGRPL
TNNSAAASFG STMVGGAPVP AVTATLRAME SAGVIRTLAE PNLTAISGES ATFISGGEFP
IPAGFSCDPA TRVCLTQIRF KKFGISLNFT PVVLTEGRIS LRVMTEVSEL SNENSMTLNQ
SVGNSLTVPS IRTRRAETTL EIPSGGSMAM AGLIHQQTKQ VINGLPGIAQ VPVLGALFRS
RDYVNGQTEL MVLVTPYVVR AVAQKDLSRP DDGFADASDP QSDLLGSLNR IYGAPGRVEP
ARHYRGTYGF ITD
|
|---|
| |