Gene Nwi_0298 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNwi_0298 
Symbol 
ID3677126 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrobacter winogradskyi Nb-255 
KingdomBacteria 
Replicon accessionNC_007406 
Strand
Start bp338452 
End bp339918 
Gene Length1467 bp 
Protein Length488 aa 
Translation table11 
GC content64% 
IMG OID637711838 
Producttype II secretion system protein E 
Protein accessionYP_316917 
Protein GI75674496 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4962] Flp pilus assembly protein, ATPase CpaF 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTTTGGCA AGCGTAGCGG ACCAGAGGAC AACGCCCGGA AGCTGGCGAG CCTGACGGAG 
GTCATGCCGC CACCCTCGAA CGCGCGAGCT TCCGCGGAAA TCGCTTCGCC AAAGATCGCC
TCGCCGCCGC TCGCGCCGCC GCGCCCGGCG GCCCAGACGC CAAGCATCGA CGCCCGCAGG
TCCGACACCT ATTACCAGGT CAAGGCGACC ATTTTCGGCG CTTTGATCGA GGCCATCGAC
CTCGCCCAGC TCGCCAAACT CGACGGCGAG TCCGCGCGCG AGGAAATTCG CGACATCGTC
AACGAGATCA TCGCGATCAA GAATATCGTG ATGTCGATCG CCGAGCAGGA AGAACTGCTC
GACGACATCT GCAACGACGT TCTCGGGTAT GGACCGCTCG AGCCGCTGCT GTCCCGCGAC
GATATCGCCG ACATCATGGT CAACGGCGCC GGCACGGTCT TCATCGAGGT CGCGGGAAAG
ATCCAGCGCA CCGGAATCCG GTTCCGCGAC AATCAGCAGC TGCTGAACAT CTGTCAGCGG
ATCGTCAGCC AGGTCGGGCG GCGGGTCGAT GAGTCCTCGC CGATATGCGA CGCTCGTCTC
GCCGACGGAT CCCGCGTCAA CGCCATCGTC CCGCCGCTCG CGATCGACGG GCCCGCGCTG
ACGATCCGTA AGTTCAAGAA GGACAAGCTG ACCCTCGATC AACTGGTCAG GTTCGGCGCC
ATCACTCCCG AAGGCGGCAC GATCCTTCAA ATCATCGGGC GGTGCCGCGC CAATGTGCTG
ATCTCGGGCG GCACCGGCTC CGGCAAGACC ACGCTGCTGA ACTGCATCAC CAACTATATC
GACCACGACG AACGCATCAT CACCTGCGAG GACGCGGCCG AGCTTCAGTT GCAGCAACCG
CACGTCGTTC GGCTCGAAAC CCGTCCCCCC AACATCGAGG GCGAAGGCCA GATAACGATG
CGCGACCTGG TCCGCAACTG CCTGCGCATG CGCCCCGAGC GCATCATCGT CGGCGAGGTT
CGCGGACCGG AGGCATTCGA CCTGCTGCAG GCCATGAACA CCGGCCATGA CGGTTCGATG
GGCACGCTGC ACGCGAATAA CCCGCGCGAA GCGCTATCGC GCTGCGAATC GATGATCACG
ATGGGCGGCT TTGCACTGCC TTCGCGCACG ATCCGCGAGA TGATCTGCGC CTCGATCGAC
ATCATCATCC AGGCCGCGCG CCTGCGCGAC GGCTCGCGAC GCATCACCCA CATTACCGAG
CTGATGGGGA TGGAGGGCGA CACCATCATC ACCCAGGATA TCTTCGTCTA CGATCTGCTC
GGTGAGGATG CCAACGGCAA CGTGATCGGC CGGCACCGTT CGACGGGAAT CGGCCGGCCG
CGGTTCTGGG AACGCGCGCG GTACTACGGC GAGGAGAAGC GACTTGCCGC CGCGCTCGAT
GCGGCGGAAG TCAAGGTCGA GATCTGA
 
Protein sequence
MFGKRSGPED NARKLASLTE VMPPPSNARA SAEIASPKIA SPPLAPPRPA AQTPSIDARR 
SDTYYQVKAT IFGALIEAID LAQLAKLDGE SAREEIRDIV NEIIAIKNIV MSIAEQEELL
DDICNDVLGY GPLEPLLSRD DIADIMVNGA GTVFIEVAGK IQRTGIRFRD NQQLLNICQR
IVSQVGRRVD ESSPICDARL ADGSRVNAIV PPLAIDGPAL TIRKFKKDKL TLDQLVRFGA
ITPEGGTILQ IIGRCRANVL ISGGTGSGKT TLLNCITNYI DHDERIITCE DAAELQLQQP
HVVRLETRPP NIEGEGQITM RDLVRNCLRM RPERIIVGEV RGPEAFDLLQ AMNTGHDGSM
GTLHANNPRE ALSRCESMIT MGGFALPSRT IREMICASID IIIQAARLRD GSRRITHITE
LMGMEGDTII TQDIFVYDLL GEDANGNVIG RHRSTGIGRP RFWERARYYG EEKRLAAALD
AAEVKVEI