Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Nwi_0177 |
Symbol | |
ID | 3676633 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nitrobacter winogradskyi Nb-255 |
Kingdom | Bacteria |
Replicon accession | NC_007406 |
Strand | + |
Start bp | 202121 |
End bp | 203752 |
Gene Length | 1632 bp |
Protein Length | 543 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637711715 |
Product | RNA polymerase factor sigma-54 |
Protein accession | YP_316797 |
Protein GI | 75674376 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.570335 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.703309 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGCTGA CGCAGAAACT CGAATTTCGA CAGTCCCAGT CGCTGGTGAT GACGCCGCAG CTGATGCAGG CGATCAAGCT GCTGCAACTG TCGAATCTGG ACCTCTCAGC ATATGTCGAG GAGGAGCTGG AGCGGAATCC GCTATTGGAG CGTGCCAGCG ACGGCTCCGG CCCGCCGGCC GCCGAAGCAG CAAGCGATGT TGAATATTCA GAAGGCGACG AAGCGGCGTT CGAGGACCAC GGCGGGGGCG AGCGCACCGG CGCTCAGGAT CCGGCGTCCA CGCCCGAGGA ATGGATGAAC CGCGATCTCG GCAGTCGTGC GGAGATCGAG CAGACCTTCG ATAGCGGTCT GGAGAATGTT TTTCCGGAAG AACCGGCCGA GGCGGCTGCG CGGACCGCGC AGGACGCCGC GCCGAGCGCG TTCACGGAAT GGGGAGGCGG TGCCTCGAGC GATGACAGCT ACAATCTCGA AGCTTTCGTC GCGGCGGAGA TAACGCTCAG TGAACATCTC GCCGAACAGC TTGCGGTGGC TCTCACCTCG CCGGCGCAGC GCATGATCGG ACGGTATCTG ATCGATCTCG TCGACGAGGC TGGCTACCTG CCGGCCGACC TCGGCGAAGC CGGCGACAGG CTCGGCGCCG GCGAAAGCGA TGTGGCGGCC GCTGTCGCGG TATTGCAGAC GTTCGATCCG CCCGGCATCT GCGCCCGCAG CCTGAGCGAA TGCCTTGCGA TCCAGTTGCG CGAGAAGAAC CGCTACGATC CGGCGATGCA GGCGCTGGTC GAGCATCTCG AACTGCTGGC GAGGCGCGAC TTCGCGGCCT TGCGCAGGAT CTGCGGCGTC GACGATGAAG ACCTTGCCGA GATGATCGGC GAAATCCGTC ATCTCGATCC CAAGCCGGGC TTGCGGTTCG GTGCCGCGCG CACGCAGTCG GTGGTGCCGG ACGTGTATGT GCGTCCCGGC CCGGACGGCG GCTGGCTCGT GGAACTCAAC AGCGAGACGC TGCCGCGCGT ACTCGTCAAC CACACCTACT ATGCCGAATT GTCGAAGACG ATCCGCAAGG ACGGCGACAA AACCTATTTC ACGGACTGTT TGCAAAACGC GACCTGGCTG GTCCGTGCGC TCGATCAGCG CGCCCGCACC ATTCTCAAGG TGGCGACCGA GATCGTGCGG CAGCAGGACG GCTTTTTCGC GCACGGCATC GCCCATCTGA GACCGCTCAA TCTCAGGACC GTGGCGGATG CGATCCAGAT GCATGAATCC ACCGTGTCCC GCGTCACCGC CAACAAATAC ATGGCGACAA ATCGTGGCAT CTTCGAACTG AAATACTTCT TCACCGCTTC GATCGCCGCG GCCGACGGCG GTTCCGCCCA CTCGGCGGAA GCGGTCCGGC ACCACATCAA GCGGCTGATC GATGCCGAAT CGCCGTCGGC GATTCTGTCC GACGACACCA TCGTGGAACG GCTGCGCGAA GCCGGAATTG ATATCGCACG CCGCACAGTG GCGAAGTATC GCGAAGCGCT GCGAATTCCT TCCTCGGTGC AGCGCCGCCG TGAAAAGCAG AATCTGCCAG GCGGCGCGCG CGCCGAGACC AGGAAGCCGC CGAACCGCCC GCGCGATGCC GCACCGGCTT GA
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Protein sequence | MALTQKLEFR QSQSLVMTPQ LMQAIKLLQL SNLDLSAYVE EELERNPLLE RASDGSGPPA AEAASDVEYS EGDEAAFEDH GGGERTGAQD PASTPEEWMN RDLGSRAEIE QTFDSGLENV FPEEPAEAAA RTAQDAAPSA FTEWGGGASS DDSYNLEAFV AAEITLSEHL AEQLAVALTS PAQRMIGRYL IDLVDEAGYL PADLGEAGDR LGAGESDVAA AVAVLQTFDP PGICARSLSE CLAIQLREKN RYDPAMQALV EHLELLARRD FAALRRICGV DDEDLAEMIG EIRHLDPKPG LRFGAARTQS VVPDVYVRPG PDGGWLVELN SETLPRVLVN HTYYAELSKT IRKDGDKTYF TDCLQNATWL VRALDQRART ILKVATEIVR QQDGFFAHGI AHLRPLNLRT VADAIQMHES TVSRVTANKY MATNRGIFEL KYFFTASIAA ADGGSAHSAE AVRHHIKRLI DAESPSAILS DDTIVERLRE AGIDIARRTV AKYREALRIP SSVQRRREKQ NLPGGARAET RKPPNRPRDA APA
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