| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nwi_0177 |
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| Symbol | |
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| ID | 3676633 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter winogradskyi Nb-255 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007406 |
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| Strand | + |
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| Start bp | 202121 |
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| End bp | 203752 |
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| Gene Length | 1632 bp |
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| Protein Length | 543 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637711715 |
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| Product | RNA polymerase factor sigma-54 |
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| Protein accession | YP_316797 |
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| Protein GI | 75674376 |
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| COG category | [K] Transcription |
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| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
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| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.570335 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.703309 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCTGA CGCAGAAACT CGAATTTCGA CAGTCCCAGT CGCTGGTGAT GACGCCGCAG
CTGATGCAGG CGATCAAGCT GCTGCAACTG TCGAATCTGG ACCTCTCAGC ATATGTCGAG
GAGGAGCTGG AGCGGAATCC GCTATTGGAG CGTGCCAGCG ACGGCTCCGG CCCGCCGGCC
GCCGAAGCAG CAAGCGATGT TGAATATTCA GAAGGCGACG AAGCGGCGTT CGAGGACCAC
GGCGGGGGCG AGCGCACCGG CGCTCAGGAT CCGGCGTCCA CGCCCGAGGA ATGGATGAAC
CGCGATCTCG GCAGTCGTGC GGAGATCGAG CAGACCTTCG ATAGCGGTCT GGAGAATGTT
TTTCCGGAAG AACCGGCCGA GGCGGCTGCG CGGACCGCGC AGGACGCCGC GCCGAGCGCG
TTCACGGAAT GGGGAGGCGG TGCCTCGAGC GATGACAGCT ACAATCTCGA AGCTTTCGTC
GCGGCGGAGA TAACGCTCAG TGAACATCTC GCCGAACAGC TTGCGGTGGC TCTCACCTCG
CCGGCGCAGC GCATGATCGG ACGGTATCTG ATCGATCTCG TCGACGAGGC TGGCTACCTG
CCGGCCGACC TCGGCGAAGC CGGCGACAGG CTCGGCGCCG GCGAAAGCGA TGTGGCGGCC
GCTGTCGCGG TATTGCAGAC GTTCGATCCG CCCGGCATCT GCGCCCGCAG CCTGAGCGAA
TGCCTTGCGA TCCAGTTGCG CGAGAAGAAC CGCTACGATC CGGCGATGCA GGCGCTGGTC
GAGCATCTCG AACTGCTGGC GAGGCGCGAC TTCGCGGCCT TGCGCAGGAT CTGCGGCGTC
GACGATGAAG ACCTTGCCGA GATGATCGGC GAAATCCGTC ATCTCGATCC CAAGCCGGGC
TTGCGGTTCG GTGCCGCGCG CACGCAGTCG GTGGTGCCGG ACGTGTATGT GCGTCCCGGC
CCGGACGGCG GCTGGCTCGT GGAACTCAAC AGCGAGACGC TGCCGCGCGT ACTCGTCAAC
CACACCTACT ATGCCGAATT GTCGAAGACG ATCCGCAAGG ACGGCGACAA AACCTATTTC
ACGGACTGTT TGCAAAACGC GACCTGGCTG GTCCGTGCGC TCGATCAGCG CGCCCGCACC
ATTCTCAAGG TGGCGACCGA GATCGTGCGG CAGCAGGACG GCTTTTTCGC GCACGGCATC
GCCCATCTGA GACCGCTCAA TCTCAGGACC GTGGCGGATG CGATCCAGAT GCATGAATCC
ACCGTGTCCC GCGTCACCGC CAACAAATAC ATGGCGACAA ATCGTGGCAT CTTCGAACTG
AAATACTTCT TCACCGCTTC GATCGCCGCG GCCGACGGCG GTTCCGCCCA CTCGGCGGAA
GCGGTCCGGC ACCACATCAA GCGGCTGATC GATGCCGAAT CGCCGTCGGC GATTCTGTCC
GACGACACCA TCGTGGAACG GCTGCGCGAA GCCGGAATTG ATATCGCACG CCGCACAGTG
GCGAAGTATC GCGAAGCGCT GCGAATTCCT TCCTCGGTGC AGCGCCGCCG TGAAAAGCAG
AATCTGCCAG GCGGCGCGCG CGCCGAGACC AGGAAGCCGC CGAACCGCCC GCGCGATGCC
GCACCGGCTT GA
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| Protein sequence | MALTQKLEFR QSQSLVMTPQ LMQAIKLLQL SNLDLSAYVE EELERNPLLE RASDGSGPPA
AEAASDVEYS EGDEAAFEDH GGGERTGAQD PASTPEEWMN RDLGSRAEIE QTFDSGLENV
FPEEPAEAAA RTAQDAAPSA FTEWGGGASS DDSYNLEAFV AAEITLSEHL AEQLAVALTS
PAQRMIGRYL IDLVDEAGYL PADLGEAGDR LGAGESDVAA AVAVLQTFDP PGICARSLSE
CLAIQLREKN RYDPAMQALV EHLELLARRD FAALRRICGV DDEDLAEMIG EIRHLDPKPG
LRFGAARTQS VVPDVYVRPG PDGGWLVELN SETLPRVLVN HTYYAELSKT IRKDGDKTYF
TDCLQNATWL VRALDQRART ILKVATEIVR QQDGFFAHGI AHLRPLNLRT VADAIQMHES
TVSRVTANKY MATNRGIFEL KYFFTASIAA ADGGSAHSAE AVRHHIKRLI DAESPSAILS
DDTIVERLRE AGIDIARRTV AKYREALRIP SSVQRRREKQ NLPGGARAET RKPPNRPRDA
APA
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