| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nwi_0098 |
|---|
| Symbol | trmE |
|---|
| ID | 3674298 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter winogradskyi Nb-255 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007406 |
|---|
| Strand | - |
|---|
| Start bp | 116402 |
|---|
| End bp | 117772 |
|---|
| Gene Length | 1371 bp |
|---|
| Protein Length | 456 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637711634 |
|---|
| Product | tRNA modification GTPase TrmE |
|---|
| Protein accession | YP_316718 |
|---|
| Protein GI | 75674297 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0486] Predicted GTPase |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0727899 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATCCAC GAGAGCAAAC CATCTTCGCG CTGTCATCGG GCCGGCCGCC GTCGGCGATT
GCTGTCGTGC GCGCGTCGGG TTCGCAGGCC GGGACCGCGC TTCGTAAACT CGCAGGCGCC
ATTCCGGCTG CGCGCACGGC GAAGCGTGTC TTGCTGCGCG ACAGCGTTGG TGAAGCGATC
GATGACGCTG TCATCCTGTG GTTTCCCGCG CCTGCGAGCG CAACCGGCGA GGATATCGCG
GAGTTTCACG TTCACGGTAG CCGCGCGGTG GTGAATGCCT TGATCGCGGC GCTGTCGTCG
ATCGACGATG CGCGCGCGGC GGAGCCGGGA GAGTTTACAC GGCGCGCTTT CGAGAACGGC
AAGATCGATC TCACCGAAGC CGAGGGCCTC GATGACCTGA TTCATGCGGA CACCGACCGC
CAGCGCCGTC AGGCCTTGCG CCAGTTGCAG GGTCTGCTCG GCGATCGCGC GCGCGGTTGG
CGCAAGGAGC TGATCGATGC CTCGGCTTTG ATCGAAGCCG GAATCGATTT CGCCGATGAA
GAGGATGTGC CGGAGGATCT CGCGAGACCG GCGCTGGAAA AGATCGCGCA GCTTCGTCGC
GAGATCGAGC AAACCCTTGC GGCTTCAGCG CGGGGCGAGC GCCTGCGCGA CGGCCTGACG
GTCGCGATCG CCGGCCCGCC GAACGCGGGC AAGTCGACGC TGCTCAATCG TCTGGCCCGT
CGCGAAGCGG CAATCGTTTC GCCGCACGCG GGAACGACGC GTGACATCAT AGAGGTGTAT
CTCGATCTCG ACGGTTATCC GGTGACGCTC ATCGATACGG CGGGCATTCG CGAGACTGAC
GATCCCGTTG AGCAGGAGGG CGTGCGGCGG GCCCGCGATC GCGTCGCGAA GGCGGATCTG
GTGTTGTGGC TTTCGGATGA TCATGGCGGT GAGCCGGACC AAACGATTCG TTCTGGGGAG
ACGTCGCTCT GGCTGATACG CAACAAGATC GATCTTGCGG GCCCGGAGAA TGATGGGGCG
AAGCCGGGGC GGTTCGAGAC GAAAGCCGGA CAGAGCGCGC CGCCGTGGCG GTTCCGTATT
TCGGCGTCGC GGGGCGACGG CGTTGATGAT CTGGTGTCGG CGCTGACGGC CTTCGCGGAA
AAGCTGCTTG GATCGAGCGA GGCGGGTGTG ATCACGCGCT TGCGGCACCG CAACATATTG
CGGGATGCCG TCGCATCGCT GGCAAAGGCG GAAACGCTGG CGGGCCGGGG CGACGAGCTT
GTGGCCGAGG AATTACGAAT AGCGATTCAT CTCATGGGAC GGCTGCTCGG CCGTGTCGAT
ATAGATGATA TTCTCGATTC ACTTTTTAAG GAGTTCTGCA TCGGTAAATA A
|
|---|
| Protein sequence | MHPREQTIFA LSSGRPPSAI AVVRASGSQA GTALRKLAGA IPAARTAKRV LLRDSVGEAI
DDAVILWFPA PASATGEDIA EFHVHGSRAV VNALIAALSS IDDARAAEPG EFTRRAFENG
KIDLTEAEGL DDLIHADTDR QRRQALRQLQ GLLGDRARGW RKELIDASAL IEAGIDFADE
EDVPEDLARP ALEKIAQLRR EIEQTLAASA RGERLRDGLT VAIAGPPNAG KSTLLNRLAR
REAAIVSPHA GTTRDIIEVY LDLDGYPVTL IDTAGIRETD DPVEQEGVRR ARDRVAKADL
VLWLSDDHGG EPDQTIRSGE TSLWLIRNKI DLAGPENDGA KPGRFETKAG QSAPPWRFRI
SASRGDGVDD LVSALTAFAE KLLGSSEAGV ITRLRHRNIL RDAVASLAKA ETLAGRGDEL
VAEELRIAIH LMGRLLGRVD IDDILDSLFK EFCIGK
|
|---|
| |