| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_2740 |
|---|
| Symbol | |
|---|
| ID | 3672806 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiobacillus denitrificans ATCC 25259 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007404 |
|---|
| Strand | - |
|---|
| Start bp | 2821011 |
|---|
| End bp | 2823080 |
|---|
| Gene Length | 2070 bp |
|---|
| Protein Length | 689 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637711448 |
|---|
| Product | heavy metal translocating P-type ATPase |
|---|
| Protein accession | YP_316498 |
|---|
| Protein GI | 74318758 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG2217] Cation transport ATPase |
|---|
| TIGRFAM ID | [TIGR01494] ATPase, P-type (transporting), HAD superfamily, subfamily IC
[TIGR01511] copper-(or silver)-translocating P-type ATPase
[TIGR01525] heavy metal translocating P-type ATPase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0201437 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACGAAC ACGCCAACGA CGCAAGGGCG GTTGCCACGC ACGCGGCCGC GAGTCACGTG
CACCCGTCGC CGCATGGGGG CGGCGCGCAC GCCGGGCACG GCGTCGCGCA TGGCGGCCAC
GCCGATCACG CGCGCATGGT CAGCGACTTC AGGACCCGCT TCTGGGTCGC GCTCGTGCTG
ACGCTGCCCA TTCTGGCCTT GTCGGCCGAC CTCTGGGACA TGCTCGGCCT TGCCGCCCCG
CTGCGCTTTC GCGGCGATCG CTACGTTCTG TTCCTGTTTT CCAGCGTCGT CTACTTCTAC
GGCGGCTGGC CGTTCCTCCG CGGCTTCGGC GACGAACTGC GGCAACGCAG GCCCGGCATG
ATGACGCTGA TCGCGGTGGC GATCAGCGCG GCCTACTTCT ATTCGAGCGC GGTGACCTTC
GGCCTGCCGG GCATGGGCTT CTATTGGGAG CTCGCGACCC TGATCGACAT CATGCTGCTC
GGCCACTGGA TCGAAATGAA GTCGGTGCTC GGCGCGTCGG GGGCGCTCGA GGCGCTGGTG
CGGTTGCTGC CCGCCCAGGC GCACCGCCTC GGGCCGGAAG GGCAAAGCGA GGACATCCCG
GTCGGCGACA TCGCGCCCGG CGACCGCATC CTGGTCAAGC CCGGCGAACG CGTGCCGACC
GACGGCATCA TCGTCGCGGG CGAGACGAGC CTCGACGAAT CGATGCTGAC GGGCGAGTCG
AAGCCGGTCG AGAAAGGCGA TGGCGCCGAA GCGATCGGCG GCTCGGTCAA CGGCGCCGGT
GCGATCACGC TCGAGGTCCG CAAAACCGGC GGCCAGACCT ATCTGTCGCA GGTCATGGAC
CTGGTGCGCC GCGCGCAGGA ATCGCGCTCG CGCACCCAGG ACCTGGCCAA CCGCGCTGCG
CAGTGGCTGA CCGCGATCGC GCTCGGCGGC GGCCTCGCGA CGCTGTTCGC GTGGCTCGCG
CTCGGCCGTG ACTTCGCCTT CGCGATGGAG CGCGCAGTCA CGGTGATGGT GATCGCCTGT
CCGCACGCGC TCGGCCTGGC CGTGCCGCTC GTCGTCGCGG TGAGCACGAG CATGTCGGCC
TCGCACGGCC TGCTCGTCCG GGACCGTGCG GCGTTCGAGC GCGCGCGCAA GCTCGACGCA
GTCGTCTTCG ACAAGACCGG CACGCTGACC GAAGGCCGCT TCGGCGTCGC CGACATAGTG
CTGCTGGCGG ACCTCGACGA AGCCGCCGCG CTGCGTCTGG CCGCGGCGCT CGAGAGCCAG
TCCGAGCACC CGATCGCGGC GGGCATCGTG CGCGCGGCGA AGGAGCGCGG GCTCGCATGG
CCGCCGGCCG ACGCTTTCCG CAACCTCACC GGCCGCGGTG CGCAGGCCAC GGTCGAGGGC
CGCGACGTCA AGGTCGTGAG TCCGGGCTAC CTCCGCGAAC ACGGCATCGC GGCGCGCGAT
GCGCGGCTCG ATGCGCTCGC CGCAGCGGGC AAGACCACGG TCTTCCTCGT CGTCGACGGA
AGCGCGGTCG CGGCGTTCGG ACTCGCCGAC GTCGTCCGCG CCGAGTCGAA GGCGGCGGTC
GCGCGGCTCA AGGCGATGGG CATGCAATGC ATGATGCTGA CCGGCGACTC GCGTGCGGTC
GCGCAGACCG TCGCCGCGCA GCTCGGCCTC GACGACTATT TCGCCGAAGT GCTGCCCGAG
CAGAAAGCCG AAAAGATCCG CGAGGTGAAG GCCCGTGGAC TCACCGTCGC GATGGTCGGC
GATGGTGTCA ACGACGCGCC GGCGCTCGTC GAATCGGATC TCGGCGTCGC GATCGGCGCC
GGCACCGACG TGGCGATCGA GGCCGCGGAC ATCGTGCTCG TGAGCAACGA CCCGCGCGAC
GTCGCCGCGA TCCTTGGCCT GTCGCGCAAG ACCTACGCGA AGATGATCCA GAACCTGCTC
TGGGCGACCG GCTACAACAG CTTCGCGATT CCGCTCGCGG CCGGGGTCGG CGCCGCCTGG
GGCCTGCTGC TCACGCCTGC GGTCGGGGCC GTGTTCATGT CGGCGAGCAC CGTGATCGTC
GCGATCAACG CCAAGTTACT ACGGCCCTGA
|
|---|
| Protein sequence | MDEHANDARA VATHAAASHV HPSPHGGGAH AGHGVAHGGH ADHARMVSDF RTRFWVALVL
TLPILALSAD LWDMLGLAAP LRFRGDRYVL FLFSSVVYFY GGWPFLRGFG DELRQRRPGM
MTLIAVAISA AYFYSSAVTF GLPGMGFYWE LATLIDIMLL GHWIEMKSVL GASGALEALV
RLLPAQAHRL GPEGQSEDIP VGDIAPGDRI LVKPGERVPT DGIIVAGETS LDESMLTGES
KPVEKGDGAE AIGGSVNGAG AITLEVRKTG GQTYLSQVMD LVRRAQESRS RTQDLANRAA
QWLTAIALGG GLATLFAWLA LGRDFAFAME RAVTVMVIAC PHALGLAVPL VVAVSTSMSA
SHGLLVRDRA AFERARKLDA VVFDKTGTLT EGRFGVADIV LLADLDEAAA LRLAAALESQ
SEHPIAAGIV RAAKERGLAW PPADAFRNLT GRGAQATVEG RDVKVVSPGY LREHGIAARD
ARLDALAAAG KTTVFLVVDG SAVAAFGLAD VVRAESKAAV ARLKAMGMQC MMLTGDSRAV
AQTVAAQLGL DDYFAEVLPE QKAEKIREVK ARGLTVAMVG DGVNDAPALV ESDLGVAIGA
GTDVAIEAAD IVLVSNDPRD VAAILGLSRK TYAKMIQNLL WATGYNSFAI PLAAGVGAAW
GLLLTPAVGA VFMSASTVIV AINAKLLRP
|
|---|
| |