| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_2716 |
|---|
| Symbol | cobD |
|---|
| ID | 3672781 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiobacillus denitrificans ATCC 25259 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007404 |
|---|
| Strand | - |
|---|
| Start bp | 2796812 |
|---|
| End bp | 2797744 |
|---|
| Gene Length | 933 bp |
|---|
| Protein Length | 310 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 637711423 |
|---|
| Product | cobalamin biosynthesis protein |
|---|
| Protein accession | YP_316474 |
|---|
| Protein GI | 74318734 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1270] Cobalamin biosynthesis protein CobD/CbiB |
|---|
| TIGRFAM ID | [TIGR00380] cobalamin biosynthesis protein CobD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.530545 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGGGATCG AGCTGAGCGC GCTTCTGGTC GCAGCAGCGC TGCTGCTCGA CCGGCTTCTC
GGCGAGCCGC GCCGGCTCCA CCCGCTGGCG GGATTCGGGC GGCTGGCGGC TTGGCTGGAA
GCCCGGTATA ACCCCGATGG GCGCGGGCAT CGACTGCACG GCGTGGCGGC GCTGGCGCTG
CTGCTGGTGC CGGGTGTCGC GCTCGCCGGG TGGCTGCAAC AGCAGCCGGT CGTAGGCGCG
CTGTTCAGCG CGCTCGTGCT GTACGCCGCG ATTGGCCTGA AAAGCCTGCA TCAGCATGCC
GAACCGGTGG CGACTGCGCT GGCGCGCGAC GACCTCGACG CCGCGCGCGC GGGCGTCTCG
ATGATGGTGA GCCGCGACAC TACTGCGCTC GATGCCGAAG AGGTATCGCG CGCGACCGTC
GAGTCGGTGC TGGAAAACGG CAACGACGCT GTGTTCGGCG CGCTGTTCTG GTTCCTCGTT
GCCGGCGCCG CAGGCGCGCT GGGTTATCGG CTGGTCAATA CGCTGGACGC CATGTGGGGC
TACAAGACGC CGCGCTATCT CAGCTTCGGC TGGGCGGCGG CGCGGCTCGA CGACGTCCTC
AATTTTCTGC CGGCGCGGCT GACCGCGTTG AGCTATGCGC TGCTGGGCCG TACCCGCCTC
GCGCTTGCGT GCTGGCGCAC CCAGGCGCCG GCGTGGGACA GCCCCAACGC CGGCCCGGTA
ATGGCCGCGG GCGCGGGCGC ATTGGAGGTG CGCCTGGGCG GCGCGGCGGT CTATCACGGG
CAGAGCGAAT TCCGCCCCGC GCTGGGGCAG GGCGCGGCGC CAGCGGGCGG CGACATCGCG
CGCGCCCTCA AACTGGTGCG TCACGGTGTG CTGCTGTGGC TGGCGGCGCT CGCCGCGGCC
GCGCTGCTTG GGTGGGGCGT CGGTCATGCT TGA
|
|---|
| Protein sequence | MGIELSALLV AAALLLDRLL GEPRRLHPLA GFGRLAAWLE ARYNPDGRGH RLHGVAALAL
LLVPGVALAG WLQQQPVVGA LFSALVLYAA IGLKSLHQHA EPVATALARD DLDAARAGVS
MMVSRDTTAL DAEEVSRATV ESVLENGNDA VFGALFWFLV AGAAGALGYR LVNTLDAMWG
YKTPRYLSFG WAAARLDDVL NFLPARLTAL SYALLGRTRL ALACWRTQAP AWDSPNAGPV
MAAGAGALEV RLGGAAVYHG QSEFRPALGQ GAAPAGGDIA RALKLVRHGV LLWLAALAAA
ALLGWGVGHA
|
|---|
| |