Gene Tbd_2578 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTbd_2578 
Symbol 
ID3672554 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiobacillus denitrificans ATCC 25259 
KingdomBacteria 
Replicon accessionNC_007404 
Strand
Start bp2653096 
End bp2655204 
Gene Length2109 bp 
Protein Length702 aa 
Translation table11 
GC content66% 
IMG OID637711284 
Productdiguanylate cyclase/phosphodiesterase 
Protein accessionYP_316336 
Protein GI74318596 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.194283 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAATTGC CAGGTAAAGA CTTACACCGC CGCGCCGGCG TCGGATTATT GGCGCTGAGC 
CTGCTGCTAT TGCTGTGGCA GGCAAGCCGG GTGAATCAAT TGGCGGTCTC GCCGGCCGAC
TTTCTCGCCG TTCATTCCCT GATGGAGGTC TTCGCGGTCG TGGTTGCCGC GCTCATCTTC
TTCACCGGGC ACGGGGTGCA GCAGGCCGAG CGGTCGACCC GCGCCATGGC ACTCGGCTGC
GCGTTCCTCG CGGTCGCGAT GTTCGACGTC CTGCATTTCC TATCCTCCCC CGGGATGTCG
GACATGCTGA GCCCCAACAC TCAGCATAAA TCCCTCGTTT TCGCGCTGGC GGCGCGCATC
GTGGGCGGCA TCGGACTGCT CGCCTATGTG CTGCTGCCGG AGACGCAAGC CGCACGCTCG
GGCGTCCGCC GCTACGCATG GGTCGCGGTC ATATTGCCCC TGGCTGCGCT GGCGCTGCTC
GTTCTCTACA CTCCCGACAT CGTGCCGGCG ATGTACGTGG AGGGCGTCGG GCTCACGCGC
CTGAAGGTCG GCACGCAGTG GCTGGCGATC GGCCTTTACC TGTCCGCCGC GGCGCTCGCC
CACCTGCGTC GCGGACGGCT CAGGGGTTGC GACGCCGATA GCCTGATTCT GGCCCTGCTG
CTGCTGGCGG CGAGCGAACT GTTCTTCACG CTCTACGTCG AGGTCAGCAG CACCGCGAAT
TTCATCGGCC ATTGCTACAA GGTGTTCGCC TACTATTTTC TGTACCGCGC GATCTACGCC
GAGGCGGTGA GCCGGCCGTT CCGCCGCATG CGCAACATGC TCACCCACGA CGACCTGACC
GGGCTGCCCA ACCGCACGGC GTTCAACGAA CAGCTCAATC TCTCGCTCGA GCGCGCGCGC
CGCGACGGGA CTTCCTGCGC GGTGTTACTG CTCGACCTCG ACCATCTGCA GAACGTCAAC
GACACGCTCG GCCATGAGCA GGGCGATATG CTGCTGGTCG CTGCCGCCGC GCGCATCCGT
GAGCGCCTCG GCGACGCCGG CTTCCTTGCC CGGTTCAGCG GCGACGAATT CGTGATCCTG
CTCGACAACG CCGAAGTCGA GCATGCCAGG GGAGCAGGCG AGGGCCTGCT GCGTGCCATG
GAGCAGGAGT TCGACATCGG CACCGATCGC CTCGCGATCA GCGCGAGCGT CGGCATCGTC
ACCTATCCGG CCGACGGCGA ATCGGGGAGC GTGCTCATGC GCTATGCCGA CCTCGCGCTC
CATCGCGCCA AGGTCGGTGG CCGCAACGGC CTCGTCGTCT TCAGCCGCGA TCTCGCCGAG
GTGGTCGAAC GCCGCGTCGC GATCGAGGCC CACCTCAAGA ACGCGCTCGA CCGCAACGAG
CTGTCGCTCG CCTATCAGCC CAAGCGGGAA ATCGGCAGCG GGCGGCTCAC CGGCTGGGAG
GCGCTGCTGC GCTGGCAGTC GCCGAAGCTC GGCATGGTCG GCCCGCAGGA GTTCATTCCG
ATTGCCGAGC AGACCGGCCT CATCGTGCCG ATCGGCCAAT GGGTGCTACG CAACGCCTGC
CTGCAGTTGC GCGCGTGGAA AGACCTCGGG CTCGAGGCCG GCAATATCGC CGTGAACCTG
TCGACGCGAC AGTTCCGGCA GAAGGACCTC GCCGAGCAGA TCGCGGCCGC GCTCGAGGAC
GCCGGCCTCG CCCCGGGCGA TCTCGAACTC GAACTCACCG AATCCTTGCT CATGGACAAT
CTGGCGTCGG CGGCCGAGGT TCTCGCCAGA CTCGAGCAGC TCGGCATACG CATCGCGATC
GACGATTTCG GAACCGGCTA CTCGTCGCTC AGCTACCTCA AGACCTTCCC GATCCACTGT
CTGAAGATCG ACCGCTCGTT CATCCAGGAC ATTCCGGCGG ACGAGAACGA CACCGCGATC
GTGCGCACGA TCATTGCCCT GGCGCGCAGC CTGGGCCTCA CCGTCGTCGC CGAGGGTGTC
GAAACCGAGG CCCAGCTCGA CTATCTGCGG GCCAACCAGT GCGACGAGGG TCAGGGCTAT
CTGCTCAGCC GCCCGCTCGA TCCCGATGCC TGCACGCGCC TGATGCGCGC CGGCGTGGTA
GCGGCCTGA
 
Protein sequence
MQLPGKDLHR RAGVGLLALS LLLLLWQASR VNQLAVSPAD FLAVHSLMEV FAVVVAALIF 
FTGHGVQQAE RSTRAMALGC AFLAVAMFDV LHFLSSPGMS DMLSPNTQHK SLVFALAARI
VGGIGLLAYV LLPETQAARS GVRRYAWVAV ILPLAALALL VLYTPDIVPA MYVEGVGLTR
LKVGTQWLAI GLYLSAAALA HLRRGRLRGC DADSLILALL LLAASELFFT LYVEVSSTAN
FIGHCYKVFA YYFLYRAIYA EAVSRPFRRM RNMLTHDDLT GLPNRTAFNE QLNLSLERAR
RDGTSCAVLL LDLDHLQNVN DTLGHEQGDM LLVAAAARIR ERLGDAGFLA RFSGDEFVIL
LDNAEVEHAR GAGEGLLRAM EQEFDIGTDR LAISASVGIV TYPADGESGS VLMRYADLAL
HRAKVGGRNG LVVFSRDLAE VVERRVAIEA HLKNALDRNE LSLAYQPKRE IGSGRLTGWE
ALLRWQSPKL GMVGPQEFIP IAEQTGLIVP IGQWVLRNAC LQLRAWKDLG LEAGNIAVNL
STRQFRQKDL AEQIAAALED AGLAPGDLEL ELTESLLMDN LASAAEVLAR LEQLGIRIAI
DDFGTGYSSL SYLKTFPIHC LKIDRSFIQD IPADENDTAI VRTIIALARS LGLTVVAEGV
ETEAQLDYLR ANQCDEGQGY LLSRPLDPDA CTRLMRAGVV AA