Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tbd_2578 |
Symbol | |
ID | 3672554 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thiobacillus denitrificans ATCC 25259 |
Kingdom | Bacteria |
Replicon accession | NC_007404 |
Strand | - |
Start bp | 2653096 |
End bp | 2655204 |
Gene Length | 2109 bp |
Protein Length | 702 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637711284 |
Product | diguanylate cyclase/phosphodiesterase |
Protein accession | YP_316336 |
Protein GI | 74318596 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.194283 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAATTGC CAGGTAAAGA CTTACACCGC CGCGCCGGCG TCGGATTATT GGCGCTGAGC CTGCTGCTAT TGCTGTGGCA GGCAAGCCGG GTGAATCAAT TGGCGGTCTC GCCGGCCGAC TTTCTCGCCG TTCATTCCCT GATGGAGGTC TTCGCGGTCG TGGTTGCCGC GCTCATCTTC TTCACCGGGC ACGGGGTGCA GCAGGCCGAG CGGTCGACCC GCGCCATGGC ACTCGGCTGC GCGTTCCTCG CGGTCGCGAT GTTCGACGTC CTGCATTTCC TATCCTCCCC CGGGATGTCG GACATGCTGA GCCCCAACAC TCAGCATAAA TCCCTCGTTT TCGCGCTGGC GGCGCGCATC GTGGGCGGCA TCGGACTGCT CGCCTATGTG CTGCTGCCGG AGACGCAAGC CGCACGCTCG GGCGTCCGCC GCTACGCATG GGTCGCGGTC ATATTGCCCC TGGCTGCGCT GGCGCTGCTC GTTCTCTACA CTCCCGACAT CGTGCCGGCG ATGTACGTGG AGGGCGTCGG GCTCACGCGC CTGAAGGTCG GCACGCAGTG GCTGGCGATC GGCCTTTACC TGTCCGCCGC GGCGCTCGCC CACCTGCGTC GCGGACGGCT CAGGGGTTGC GACGCCGATA GCCTGATTCT GGCCCTGCTG CTGCTGGCGG CGAGCGAACT GTTCTTCACG CTCTACGTCG AGGTCAGCAG CACCGCGAAT TTCATCGGCC ATTGCTACAA GGTGTTCGCC TACTATTTTC TGTACCGCGC GATCTACGCC GAGGCGGTGA GCCGGCCGTT CCGCCGCATG CGCAACATGC TCACCCACGA CGACCTGACC GGGCTGCCCA ACCGCACGGC GTTCAACGAA CAGCTCAATC TCTCGCTCGA GCGCGCGCGC CGCGACGGGA CTTCCTGCGC GGTGTTACTG CTCGACCTCG ACCATCTGCA GAACGTCAAC GACACGCTCG GCCATGAGCA GGGCGATATG CTGCTGGTCG CTGCCGCCGC GCGCATCCGT GAGCGCCTCG GCGACGCCGG CTTCCTTGCC CGGTTCAGCG GCGACGAATT CGTGATCCTG CTCGACAACG CCGAAGTCGA GCATGCCAGG GGAGCAGGCG AGGGCCTGCT GCGTGCCATG GAGCAGGAGT TCGACATCGG CACCGATCGC CTCGCGATCA GCGCGAGCGT CGGCATCGTC ACCTATCCGG CCGACGGCGA ATCGGGGAGC GTGCTCATGC GCTATGCCGA CCTCGCGCTC CATCGCGCCA AGGTCGGTGG CCGCAACGGC CTCGTCGTCT TCAGCCGCGA TCTCGCCGAG GTGGTCGAAC GCCGCGTCGC GATCGAGGCC CACCTCAAGA ACGCGCTCGA CCGCAACGAG CTGTCGCTCG CCTATCAGCC CAAGCGGGAA ATCGGCAGCG GGCGGCTCAC CGGCTGGGAG GCGCTGCTGC GCTGGCAGTC GCCGAAGCTC GGCATGGTCG GCCCGCAGGA GTTCATTCCG ATTGCCGAGC AGACCGGCCT CATCGTGCCG ATCGGCCAAT GGGTGCTACG CAACGCCTGC CTGCAGTTGC GCGCGTGGAA AGACCTCGGG CTCGAGGCCG GCAATATCGC CGTGAACCTG TCGACGCGAC AGTTCCGGCA GAAGGACCTC GCCGAGCAGA TCGCGGCCGC GCTCGAGGAC GCCGGCCTCG CCCCGGGCGA TCTCGAACTC GAACTCACCG AATCCTTGCT CATGGACAAT CTGGCGTCGG CGGCCGAGGT TCTCGCCAGA CTCGAGCAGC TCGGCATACG CATCGCGATC GACGATTTCG GAACCGGCTA CTCGTCGCTC AGCTACCTCA AGACCTTCCC GATCCACTGT CTGAAGATCG ACCGCTCGTT CATCCAGGAC ATTCCGGCGG ACGAGAACGA CACCGCGATC GTGCGCACGA TCATTGCCCT GGCGCGCAGC CTGGGCCTCA CCGTCGTCGC CGAGGGTGTC GAAACCGAGG CCCAGCTCGA CTATCTGCGG GCCAACCAGT GCGACGAGGG TCAGGGCTAT CTGCTCAGCC GCCCGCTCGA TCCCGATGCC TGCACGCGCC TGATGCGCGC CGGCGTGGTA GCGGCCTGA
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Protein sequence | MQLPGKDLHR RAGVGLLALS LLLLLWQASR VNQLAVSPAD FLAVHSLMEV FAVVVAALIF FTGHGVQQAE RSTRAMALGC AFLAVAMFDV LHFLSSPGMS DMLSPNTQHK SLVFALAARI VGGIGLLAYV LLPETQAARS GVRRYAWVAV ILPLAALALL VLYTPDIVPA MYVEGVGLTR LKVGTQWLAI GLYLSAAALA HLRRGRLRGC DADSLILALL LLAASELFFT LYVEVSSTAN FIGHCYKVFA YYFLYRAIYA EAVSRPFRRM RNMLTHDDLT GLPNRTAFNE QLNLSLERAR RDGTSCAVLL LDLDHLQNVN DTLGHEQGDM LLVAAAARIR ERLGDAGFLA RFSGDEFVIL LDNAEVEHAR GAGEGLLRAM EQEFDIGTDR LAISASVGIV TYPADGESGS VLMRYADLAL HRAKVGGRNG LVVFSRDLAE VVERRVAIEA HLKNALDRNE LSLAYQPKRE IGSGRLTGWE ALLRWQSPKL GMVGPQEFIP IAEQTGLIVP IGQWVLRNAC LQLRAWKDLG LEAGNIAVNL STRQFRQKDL AEQIAAALED AGLAPGDLEL ELTESLLMDN LASAAEVLAR LEQLGIRIAI DDFGTGYSSL SYLKTFPIHC LKIDRSFIQD IPADENDTAI VRTIIALARS LGLTVVAEGV ETEAQLDYLR ANQCDEGQGY LLSRPLDPDA CTRLMRAGVV AA
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