| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_2572 |
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| Symbol | |
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| ID | 3672548 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | + |
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| Start bp | 2646358 |
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| End bp | 2647758 |
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| Gene Length | 1401 bp |
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| Protein Length | 466 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637711278 |
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| Product | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase |
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| Protein accession | YP_316330 |
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| Protein GI | 74318590 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0773] UDP-N-acetylmuramate-alanine ligase |
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| TIGRFAM ID | [TIGR01081] UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.149553 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACATCC ACATCCTCGG CATCTGCGGC ACCTTCATGG GTGGAATCGC CGCGATCGCG
CGCAACGCCG GCCACACCGT CACCGGCTGC GACGCCAACG TCTATCCGCC GATGTCCGAC
CAGCTGCGCG CGCTCGGCAT CGAACTGACC GAAGGCTGGG ACGCCGGACA GGTCCGACTC
GAGCCCGACG CCTTCGTCGT CGGCAACGTC GTCACGCGCG GCAATCCCTT GATGGAAGCC
ATACTCGAGC GCGGCCTGCC CTACACCTCT GGCCCGCAGT GGCTCGCCGA CAACGTGCTG
CGCGACAAGT GGGTGCTCGC CGTCGCCGGC ACCCACGGCA AGACGACCAC CTCGGCGATG
CTGGCCTGGA TCCTCGAGGA CGCGCGCCTC CATCCGGGCT TCCTCGTCGG CGGCATCCCG
CAGAATTTCG GCCTGTCGGC GCGGCTCACC GACAGCCCCT TCTTCGTCAT CGAGGCCGAC
GAATACGACA CCGCCTTCTT CGACAAACGC TCCAAGTTCG TCCACTACCG CCCGCGCACG
GCGATCCTCA ACAACCTCGA GTTCGATCAC GCCGACATCT TCCCCGACAT CCAGGCGATC
GAAACCCAGT TTCACCACCT CGTGCGCACG ATTCCCGGCA ACGGCCTCAT CGTCGCCAAC
GGCCGCGAAG CCGCGCTCGA TCGCGTGCTC GAGCGCGGCC TGTGGACGCC GGTCGAACGC
TTCGGCAGCA TCGGCGGCTG GACCGCAGGC GAGGCCGATG CGAGCGGCAG CTTCGACGTC
CACTTCAACA GCGCGCTGCA AGGCCGCGTC CGCTGGGAGC TGATCGGCGA GCACAACCGC
ATGAACGCGC TCGCGGCCAT CGCCGCCGCG CGTCACGCCG GCGTGCCGGC GGCCGCCGCC
ATCGATGCAC TCAGCCGCTT CGAGAACGTC AAGCGGCGCA TGGAAATCCG CGGTGCCGTA
CACGGGATCA CGGTCTACGA CGACTTCGCC CACCATCCCA CCGCGATCAC CACTACGGTC
CAGGGCCTGC GCGCCAAGGT CGGCAACGCG CGCATCCTCG CCGTGCTCGA ACCGCGCTCC
AACACCATGA AGCTTGGCGT CATGAAGGAC GCGCTCCCCG CCAGCCTCGC CGGTGCGGAC
GAGGTGTACT GCTACGGCGC CAACCTCGGC TGGGATGCCG CCGAGGCGCT CGCGCCGCTC
GGCGAGAAGG CCCGCGTCTT CGACAACCTC GACAAGCTCG TCGCGCAACT CGTCGCTGAC
GGACGGCCCG GCGACCATGT GCTGATGATG AGTAACGGGG GCTTCGGCGG CATTCACGCG
AAGCTCCTGG ATGCGCTGCA TCATCACTAT CACGAGGAGA TCGTGCTGAC GCCGATGCAT
CGGTATGGGG GGTATGCGTG A
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| Protein sequence | MHIHILGICG TFMGGIAAIA RNAGHTVTGC DANVYPPMSD QLRALGIELT EGWDAGQVRL
EPDAFVVGNV VTRGNPLMEA ILERGLPYTS GPQWLADNVL RDKWVLAVAG THGKTTTSAM
LAWILEDARL HPGFLVGGIP QNFGLSARLT DSPFFVIEAD EYDTAFFDKR SKFVHYRPRT
AILNNLEFDH ADIFPDIQAI ETQFHHLVRT IPGNGLIVAN GREAALDRVL ERGLWTPVER
FGSIGGWTAG EADASGSFDV HFNSALQGRV RWELIGEHNR MNALAAIAAA RHAGVPAAAA
IDALSRFENV KRRMEIRGAV HGITVYDDFA HHPTAITTTV QGLRAKVGNA RILAVLEPRS
NTMKLGVMKD ALPASLAGAD EVYCYGANLG WDAAEALAPL GEKARVFDNL DKLVAQLVAD
GRPGDHVLMM SNGGFGGIHA KLLDALHHHY HEEIVLTPMH RYGGYA
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