| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_2548 |
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| Symbol | |
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| ID | 3672524 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | - |
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| Start bp | 2618827 |
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| End bp | 2624709 |
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| Gene Length | 5883 bp |
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| Protein Length | 1960 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637711254 |
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| Product | CheA Signal transduction histidine Kinases (STHK) |
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| Protein accession | YP_316306 |
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| Protein GI | 74318566 |
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| COG category | [K] Transcription
[N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG0643] Chemotaxis protein histidine kinase and related kinases
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.798517 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGCCT TACTCGATTA CGACACCGGT CCCCTGAATT GGGTGCGCGC GGACATCGAC
GCAGCCCTCC AGGCCGCGCT CGGGCGTATC CAGGCCTACA GCGCCGACGG CGATCTCACC
AATGCCATGC GCCTGGCGCG CGACGACGCC CATCAGGTCG CCGGCGCGCT ACGCATGGTC
GGCCTCGAAG GCGCTGCGAC GCTCGCCGAT GCGCTGAAGT CGCTGCTCGG CGACCTCGAC
GAAAGTCGGG CACAGCCGAA CGACGCGCTC GTGCGGGCGT TGCGCAACGC CATCGAGGGC
CTGCAGCGCT GGGTGCGGGA TCTCGCGGAC GGCCGCGGCA CCGGCGAACT CGCGCTGTTT
CCGCTGTACA AGCGTTTGCG CGAACTGCAG GGCGCCGAGC GCGTGTTCGA AGGCGAGTTG
TTCTTCCCCG ACATGCGCAG CCGGGTGTCG CCCGGCCCCG CCGTGGCACT GGCGCCCGAA
GCGCTCGCGG CCGAGGTCAA GTCCGCGCGT GCGACGTTCC AGCGCGGGCT GCTGGCCTTT
CTGCGCAACG TCGACGCCGA GCAGGGTCTG CGCCGCATGC GCGACGCGCT TGCGGCGATC
GAGCAGGTCG CGCCCTCGCA GGCCTCGCGC ACCTTCTGGT GGGCCTGTGT GGGCTTCGTC
GACAGTCTGA TCGCGCACGG CGTCGAAGCC GACTTCCACG TCAAGCAATT GCTCGCCCGC
GTCGACCTGC AGATGCGGCG GCTCATGGAA GGCTCGCCGC AGGTTGCCGA ACGTCTGCTG
CGCGACGCGC TCTTCTTCGT CGCGAAGAGC CAGAGCCTCG ACGGCCGTGC GGCCGAAGTC
CGCGCCACCT TCGGCCTCGA TCGCTACCTG CCAGGGCGCG GCATGCTCGA TCCCGAGGCG
CTGGCGCGCA TGCGCCCGGT GCTCGACGCG CTCAACGCCG GCCTGAAGGC CGCGCACGAC
AACTGGCGCG CCTATGTCGA AGGCGACGCA GCGCAGTTGG TGCAATTCCA GACCCAGCTC
GAACGCATGC AGCCCCAGAC GCAGATGCTC GCCGAAAGTG GCCTCAAGGC CTTGCTCGAC
GGCCTCTCGG CACTTGCCGC GGCGACCGGC ACGCGTACGG GCGAAGCCCG CGAACAGGCC
GAACTCGAAG TGGCGGCGAC GCTGCTCTTC CTGCAGAACG GGGTGGCGCA GGAAGACGTG
CTGCATGCCG ATTTCGCCGC CCGCGCCGCT GCCCAGCATG CACGCCTGAT GGCCCTGATC
GAAGGCCGCG AGATGCCGGC CGGCGCACCC GACGCCGCCG CCCAGCGCGA AGCCGAGCGT
GACATGCTGA CGCACATGGC GCAGGAGGTC GGACAAAATC TGAAGCAGAT GGAGGAGGCC
CTCGACGCCT TCTTCCGTGA CGAGAACGAG CGCGAGGCGC TCGCGGGCTT GCCCGCGCTG
GCGCAGCAGG CCCAGGGCGC GCTGACCATG CTCGAACTGC CCGACGCGGC CGCATTGCTG
ATCGCCGCGA GCGCCAGCGT GCAGCCCTTC ATCGACAGCG GCTATCCTGA CCAAGCGGCG
CAGCAGCGTC TGGCCGACGC GTTCTCGAGC CTCGGGCTGT ACATCGAAGC CTACTGCGCC
GGCCGCGCCG ATGCGGCGCG CATCCTGCGC CCGGTGCTGG CCGAGTTCGG TCTCACTGCG
TCGAACGGCG CGGACGAAGG CGGGTTTGAC GACACCGTCG AATCCGGGCT CCCCGGGCGC
AAGACCGAGG TCCGGGACAC TTATGCTGTG TGGCGGGACG ACCCGGACGG CGCGGCAAAA
AAAAAATTCC TTGACGCGCT GAGCGAGCTC GGCCGCGATG CCGAGCTGAT CGACGACGTC
CGACTGAAGC AGCAGACCGG ATCGGCGCTC GCTGCCTGCC GGGAGGCAGC GGCGGCACCC
GTCGCACTCG ACGCCGACAT CGCCGCGCTC ACCGGACTCG CGTTACCCGC ACGTGCGACC
GCCACGATCG CCGTCGATGA CGACGCCGTC ACGGAGCCGG ATGAATCCGA GCCCGTCGCA
GAGGCGCCTG CCGATCCCCT GGAAGCGTTT GCCGTCACCG GACTCGAGGT CTCAGCGGAC
GTCGAAGCCC CGCCGGTTTC TCTCCTCGCG GGGCTGCCCG AGGTCGAGCT CGGGCCCGAG
CTGGCATCAG CATCGGCGGA CACCGGTACA AGCGCGACGG ACACTATGCT TCGCGTCGTG
ATTCCCGAAG GGGCTGAGCC CGAACTGCTC GATATCTTTC TCGAGGAGGC CGAGGAGGTG
CTTGCGACGA TGGGCGAGGC CTGCGAGGGC TGCCAGAGCC AGCCGGACGA CCGCGAGTCG
CTGACCGTCG TGCGCCGCGC CTTCCATACG CTCAAGGGCA GTGGCCGCAT GGTCGGGCTC
GAAGACCTCG GTGAGACCGC GTGGCGCCAT GAACAGCTGC TGAACGGCTG GCTCGCCGAG
AAAAAACCCG TCAGCGCCGA CCTGATCCAT CTCGTCGGCC GAGCGCGTTC GGTATTCCAC
GACTGGGTCG ACGCCCTCAA GACCAAGCGG ACGCCGCTGC TTCCGGTCCC TGCCTTGCTC
GACGCGGTCG ACCGCGTCGC CCAAGGCCTT CCGTTCGACG CGCCGGTCGT CGAATTTGTG
GCCGTGGCGC CGAGCGGGCC GACCTCTGAA CTGCCATCGC TCGACATCAG CCTCAAGGCG
GCGGACGACG TGACGCCATC GGCGCAATCG GATGCCACGA TCGATGCATG GCCCGGCCTC
GACGAGACCG AGCCGGGCCG CGTGGCCGCG GATTCTCCTG CCGCCGAGGC GGACTCCTGC
GGCGTCGATG CGCCGCCTGT CCAGCCCGCG GTGCTCGAAG TCGAACCCGC GTTCTCGCTG
CCCGAGACCA CGGGCGACGC CTTCGTCGCG CCGCCGGCGC AGCCCGAAGT GCAGCCCGTG
TCCGACAACG ACGCGGCGCA TGGCGCCGTC GTCGAATACG CCCGCGTGCC GGCCGGGCAG
GACGCTACGG ACGAAGTGTG CATCGGCAGC GTCTGCGTTT CGAGCGGTCT CTACGAGATT
TTCGTCACTG AGGCGCATCA GCGCCTCGCG GTGCTGCAGG AAGAAAGTGC GCGGCACGCC
GAAACGGTGC ATCGTGCGGT CGGTGAGGAT GCGCGGCGCG CCGTTCATAC GCTCGGCGGC
ATCGCGGGCA CCGCGGGGCT CGGCGTTCTC GCCGAGTTGT CGCTCGCACT CGAGCAGTAC
TGGAACCGCT TTGCCCACTT GCCGCTTCCT CCGGCGCATC TGCCGCTGGT CCAGGATACG
GTCGCGCGCC TGCACGCCAT GATGGCGTCG GTCGAGGGCG GCGAGTTGCC CGAACCCGCG
CACGACCTGA TCGCCGCGCT CGGCGAACTC GAGGATGAAC AGTCCGAGCT CGACGCCCAG
GCATTCGCGC CGACCGCTGA GGCGAGCGGC GGCGAGGACG CAACCGGGAT CGTTGCGCCG
GATTTGGACA CGGCGGCCCG CGGCGATACG CGCGCCCCGC TGCCCGACGT CAGCACATTC
GTGCCCGAGA GCCCCGCTGC GGGACCGGCG CCCGTCTTCG AACGACGCGA GGTCGCCGAC
GAAATCGACC AGCAGCTGCT GCCGATTTTC CTCGAGGAGG CCGACGTGCT GGTCCCCGAT
ACCAGTGTTC AGCTCCGCGT GTGGAAGGCC GACCCGGCGG CGTCGGGCCC GCGCGACGCG
TTGCGCCGCA ACCTGCATAC GATCAAGGGC AGCGCGCGCA TGGTCGGCGC GATGCGTCTC
GGCGAGCTGA CCCACGTGAT GGAATCGCGG GTGATCGCGG TGATCGAGGG CCAGCTCAGT
GCGACCGAGG CCGTGTTCGA CACGCTCGAA GCGCAGCTCG ACCGTCTTGC CGATGCCGTC
GAGCGCCTCA AGCAGGGCGA GCTTGCGCCG CCGATCGACG ACGCACCGCT CGCCGCGCCG
ACCGAGCCCG TGCTGCGGCC GGAAGAAGCC GCGGCGACGG CCGCTGCGGC CGAGCCGCTC
GCGCCGGCGC AAGCAGCCAG CCGCGACAGT AATGCGCTTA CCTTGCGCGT CCGCGCCGAC
TGGGTCGACC GCATGGTCAA TCAGGCGGGC GAGGTCGCGA TCGCACGGTC GCGGATCGAG
AGCGAAGTGT TTGCCTTCAA GCGTCACGTC AACGAATTGT CGGACGCGCT GGCGCGGCTG
CGCGGCCATA TCCGCGAAGT CGAAATCCAG GCCGAGTCGC AGATGCAGGC GACGTTCCAG
ACCCAAGGCG TCGCGGAACA ATTCGACCCG CTCGAATTCG ACCGTTTCAC GCGTTTCCAG
GAGGTCACGC GCTTCCTCGC TGAAAGCGTG AACGACATCT CGACCGTGCA GCACATCCTG
CTCGCGCGGC TCGGCGAGGC CGACGCCGCC TTGATCCAGC AGACGCGACT GAACCGCGAA
CTGCAGCAGG ACCTGCTGCG CGTGCGCATG GTGCCGCTCT ATTCGGTCGC TGAGCGACTG
TATCGCACGG TGAGGCAGAC TGCGCGCGAC GTCGACAAGC GTGCGCAGCT CGACATCCAG
GGCGGCGACC TGGAAATCGA CCGCTCGGTG CTGGAAAAAG TCACGGCGCC GATCGAGCAT
CTGCTGCGCA ACGCACTGGC CCACGGCGTC GAGGCGCCCG AAGTGCGCCG CGCCGCGGGC
AAGCCCGAGT TCGGCGAAAT CGTGCTGTCG GCGCGCCAGT CGGGCAACGA AATGCTGATC
ACGGTGACGG ACGACGGTGC CGGCCTCGAT TACGCACGCA TTCGACAGAA GGCCGAGGAA
AACGGTCTCC TGCTGCCAGG CGCCGAACCG ACCGAAAGTC TGCTCGCGCA GATGATCTTC
GCCGCCGGCT TCTCCACGGC CGAAACCGTG AGTCAGGTCG CCGGACGCGG CGTCGGCATG
GACGTCGTGA AAAGCGAGAT CTCGGCGCTC GGCGGCCGCA TCGACATCGC CTCGACCGCG
GGCCGGGGCA CGCGCTTCGA GATCTATCTG CCATTGACGC TGGCGATGAC GCAGGCGGTC
ATGGTCCAGG CGGCGAAGCA CGACTACGCG CTGCCGGCGC CGCTCGTCCA GCAGGTGCTC
GAACTGAAGC CGCACGAGCT CGAGCAGGCC AGGGCCAGCG GAGAAGTCAA CTGGCGCGGC
GCGCGTTACC CCTTCGCCTA TTTACCTCAC CTGCTCGGCG ACCCCGACGC GGTGCACGAA
GTGCAGCGCT ACAACCCGGT CGTGCTCGTC GCCAGCGGCG CGAGCCAGGC GGCGGTGCTG
GTCGACCTCA TCGAGGGAAC GCGCGAAATC GTGGTCAAGA ACATCGGCCC GCAGATCGCG
CGGATCACGG GCGTCGCCGG CGCGACCGTG CGTGGCGACG GGCGCGTGAT CCTGATCCTC
AATCCCGTAC CGCTGGCGCT GCGTCAGGCG AGCCAGTCGC GGAGCGCGGC GGGACGCAGC
GCGCCGGTCG CGCCGGTCGA GGTCAGCGCG GCGCCGCAGC CGCCGCTGGT GCTCGTAGTC
GACGATTCGC TGACCGTGCG CAAGATCACG ACGCGCCTGC TGAGTCGCGA GGGTTTCCGC
GTCGACGCCG CGAAGGACGG CGTCGATGCG CTCGAGAAAA TGCACGACCT GATCCCGGAC
GTCGTATTGC TCGACGTTGA GATGCCGCGC ATGGACGGCT TCGAGCTCGC GCGGGTCATG
CGCGCGGACG CGCGCCTCGC GTCGGTGCCG ATCATCATGA TCACCTCGCG CACTGCGGAC
AAGCACCGCA ACCACGCGCT CGAAATCGGC GTCAACGTGT ACCTGGGCAA GCCCTATCAG
GAGCAGCAGC TGCTCGACGC GATCGCAGAA CAACTCGGTC AGACCGTTTC GCTACCGGCC
TGA
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| Protein sequence | MSALLDYDTG PLNWVRADID AALQAALGRI QAYSADGDLT NAMRLARDDA HQVAGALRMV
GLEGAATLAD ALKSLLGDLD ESRAQPNDAL VRALRNAIEG LQRWVRDLAD GRGTGELALF
PLYKRLRELQ GAERVFEGEL FFPDMRSRVS PGPAVALAPE ALAAEVKSAR ATFQRGLLAF
LRNVDAEQGL RRMRDALAAI EQVAPSQASR TFWWACVGFV DSLIAHGVEA DFHVKQLLAR
VDLQMRRLME GSPQVAERLL RDALFFVAKS QSLDGRAAEV RATFGLDRYL PGRGMLDPEA
LARMRPVLDA LNAGLKAAHD NWRAYVEGDA AQLVQFQTQL ERMQPQTQML AESGLKALLD
GLSALAAATG TRTGEAREQA ELEVAATLLF LQNGVAQEDV LHADFAARAA AQHARLMALI
EGREMPAGAP DAAAQREAER DMLTHMAQEV GQNLKQMEEA LDAFFRDENE REALAGLPAL
AQQAQGALTM LELPDAAALL IAASASVQPF IDSGYPDQAA QQRLADAFSS LGLYIEAYCA
GRADAARILR PVLAEFGLTA SNGADEGGFD DTVESGLPGR KTEVRDTYAV WRDDPDGAAK
KKFLDALSEL GRDAELIDDV RLKQQTGSAL AACREAAAAP VALDADIAAL TGLALPARAT
ATIAVDDDAV TEPDESEPVA EAPADPLEAF AVTGLEVSAD VEAPPVSLLA GLPEVELGPE
LASASADTGT SATDTMLRVV IPEGAEPELL DIFLEEAEEV LATMGEACEG CQSQPDDRES
LTVVRRAFHT LKGSGRMVGL EDLGETAWRH EQLLNGWLAE KKPVSADLIH LVGRARSVFH
DWVDALKTKR TPLLPVPALL DAVDRVAQGL PFDAPVVEFV AVAPSGPTSE LPSLDISLKA
ADDVTPSAQS DATIDAWPGL DETEPGRVAA DSPAAEADSC GVDAPPVQPA VLEVEPAFSL
PETTGDAFVA PPAQPEVQPV SDNDAAHGAV VEYARVPAGQ DATDEVCIGS VCVSSGLYEI
FVTEAHQRLA VLQEESARHA ETVHRAVGED ARRAVHTLGG IAGTAGLGVL AELSLALEQY
WNRFAHLPLP PAHLPLVQDT VARLHAMMAS VEGGELPEPA HDLIAALGEL EDEQSELDAQ
AFAPTAEASG GEDATGIVAP DLDTAARGDT RAPLPDVSTF VPESPAAGPA PVFERREVAD
EIDQQLLPIF LEEADVLVPD TSVQLRVWKA DPAASGPRDA LRRNLHTIKG SARMVGAMRL
GELTHVMESR VIAVIEGQLS ATEAVFDTLE AQLDRLADAV ERLKQGELAP PIDDAPLAAP
TEPVLRPEEA AATAAAAEPL APAQAASRDS NALTLRVRAD WVDRMVNQAG EVAIARSRIE
SEVFAFKRHV NELSDALARL RGHIREVEIQ AESQMQATFQ TQGVAEQFDP LEFDRFTRFQ
EVTRFLAESV NDISTVQHIL LARLGEADAA LIQQTRLNRE LQQDLLRVRM VPLYSVAERL
YRTVRQTARD VDKRAQLDIQ GGDLEIDRSV LEKVTAPIEH LLRNALAHGV EAPEVRRAAG
KPEFGEIVLS ARQSGNEMLI TVTDDGAGLD YARIRQKAEE NGLLLPGAEP TESLLAQMIF
AAGFSTAETV SQVAGRGVGM DVVKSEISAL GGRIDIASTA GRGTRFEIYL PLTLAMTQAV
MVQAAKHDYA LPAPLVQQVL ELKPHELEQA RASGEVNWRG ARYPFAYLPH LLGDPDAVHE
VQRYNPVVLV ASGASQAAVL VDLIEGTREI VVKNIGPQIA RITGVAGATV RGDGRVILIL
NPVPLALRQA SQSRSAAGRS APVAPVEVSA APQPPLVLVV DDSLTVRKIT TRLLSREGFR
VDAAKDGVDA LEKMHDLIPD VVLLDVEMPR MDGFELARVM RADARLASVP IIMITSRTAD
KHRNHALEIG VNVYLGKPYQ EQQLLDAIAE QLGQTVSLPA
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