| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_2507 |
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| Symbol | |
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| ID | 3671826 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | + |
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| Start bp | 2579895 |
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| End bp | 2581634 |
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| Gene Length | 1740 bp |
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| Protein Length | 579 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637711213 |
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| Product | lipid A export ATP-binding/permease protein MsbA |
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| Protein accession | YP_316265 |
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| Protein GI | 74318525 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR02203] lipid A export permease/ATP-binding protein MsbA |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGCGCGC CGACTAGCCG TCATCTCTAC GGGCGCCTGC TCGGCTACGT GAAGCCGCAC
TGGCGCATGT TCGCGCTCTC GATTGTCGGC CTGATCCTCA CCGCCGCGAC CGAGCCGATG
CTGCCGGCGC TGTTCAAACC GCTGCTGGAC GAGGGCTTCG TCGCCAAGGA CCAGGACTTC
ATCCGCTGGG TGCCGCTCTT GCTGCTGGGC CTGTTCGTCC TGAGGGGGGT CGCGAGCTTC
ATCAGCACCT ACAGCATGGC CTGGGTCGGC AGTCGCCTCG TGATGGACCT GCGCGCGGCG
ATGTTCGACA AGCTGATGGC GTTGCCGACG CGTTACTTCG ACCAGAACCC CAGCGGCCAG
CTGATTGCGC AGCTCGCGTT CAACGTCACC CAGGTCACGC AGTCGGCGAC GAGTTCGCTG
ACGACGCTCG TGCGCGACAC GGTCACCGTT CTGGGGCTGC TCGGCTATCT CGTGTGGCTC
AACTGGCGGC TCACGCTGAT CGTGTTCGCG CTCGTGCCGC TGACCTTGTG GGTCGTGCGC
GTCGCGAGCA AGCGCCTGCG CGGCCTCTCG CGCAAGGCGC AGGAGAACAT CGGTGACCTC
ACGCAGGTGG TCGACGAGGC CGTCGGCGGC CATCGCGTGG TCAAGCTCTA TGGCGGCGAA
ACCTACGAGC AGGCGCGTTT CCATCGCGCG GCGAACCTCG CGCGCCAGTT CGAGATGAAG
CGCGTCGCGG CCAACGCGGT GTACGAGCCG GTGATCCAGT TCATCGCCGC CATCGCGCTT
GCGATCATCG TGTTCATCGC GGCCGGGCAG GCGAGTGCGA ACACGACGAC GGTCGGCGGC
TTCGTCGCCT TCTTCATGGC AATGCTGCTG CTGTTCGCGC CGCTCAAGCG CCTGACCGCG
GTCAACGACC AGCTGCAGCG CGGCCTCGCG GCGTCGGAGA CGATCTTCGC GCTGCTCGAC
CAGGACGCCG AGCGCGACAC CGGCACCCGC GAACCGGCGC ACATCGAAGG CCGCCTCGCG
TTCCGTGACG TGGGCCTGAC CTACCCCGGC AAGCAGACGC CTGCACTCGC GCGCATTTCA
CTCGACATCG CGCCGGGCGA AACGGTCGCA CTCGTCGGTG CGTCGGGTTC GGGCAAGACG
ACGTTGGCGA ACCTCGTGCC GCGTTTCTAC GACCCGGATG CTGGGAGGAT CGAGCTCGAC
GGCGTCGACA TCCGCGACGT CAAGCTGCAA AGCCTGCGCG GCCACATCGC GCTGGTGTCG
CAGGACGTCG TGCTGTTCAA CGACACGCTC GCGCACAACA TCGCCTACGG CAGCAAGCGC
GAGGCGAGCC CCGACGAGAT CCGCGCGGCC TGCGTCGCGG CGCATGCCTG GGATTTCATC
CAGGCGATGC CCGACGGCCT CGACACGTTG ATCGGTGAGA ACGGCATGCG CCTGTCGGGT
GGCCAGCGCC AACGAATCGC CATCGCGCGC GCGATCCTCA AGAACGCGCC GATCCTGATT
CTCGACGAAG CGACCTCGGC GCTCGACAGC GAGTCCGAAC GCCACGTCCA AGCAGCACTC
GAGACGCTCA TGCAAAACCG CACGACGCTC GTCATCGCGC ACCGGCTGTC GACCATCGAG
CGCGCGAACC GCATCGTCGT ACTCGAAGGC GGACGCATCG TGGAAACCGG CGCCCACGCC
GACCTGCTCG CGAAGCAGGG CCGCTACGCG CAACTCCACG CGCTGCAGTT TTCGCAATGA
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| Protein sequence | MSAPTSRHLY GRLLGYVKPH WRMFALSIVG LILTAATEPM LPALFKPLLD EGFVAKDQDF
IRWVPLLLLG LFVLRGVASF ISTYSMAWVG SRLVMDLRAA MFDKLMALPT RYFDQNPSGQ
LIAQLAFNVT QVTQSATSSL TTLVRDTVTV LGLLGYLVWL NWRLTLIVFA LVPLTLWVVR
VASKRLRGLS RKAQENIGDL TQVVDEAVGG HRVVKLYGGE TYEQARFHRA ANLARQFEMK
RVAANAVYEP VIQFIAAIAL AIIVFIAAGQ ASANTTTVGG FVAFFMAMLL LFAPLKRLTA
VNDQLQRGLA ASETIFALLD QDAERDTGTR EPAHIEGRLA FRDVGLTYPG KQTPALARIS
LDIAPGETVA LVGASGSGKT TLANLVPRFY DPDAGRIELD GVDIRDVKLQ SLRGHIALVS
QDVVLFNDTL AHNIAYGSKR EASPDEIRAA CVAAHAWDFI QAMPDGLDTL IGENGMRLSG
GQRQRIAIAR AILKNAPILI LDEATSALDS ESERHVQAAL ETLMQNRTTL VIAHRLSTIE
RANRIVVLEG GRIVETGAHA DLLAKQGRYA QLHALQFSQ
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