Gene Tbd_2456 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTbd_2456 
Symbol 
ID3671775 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiobacillus denitrificans ATCC 25259 
KingdomBacteria 
Replicon accessionNC_007404 
Strand
Start bp2527115 
End bp2528167 
Gene Length1053 bp 
Protein Length350 aa 
Translation table11 
GC content69% 
IMG OID637711162 
Productdihydrouridine synthase 
Protein accessionYP_316214 
Protein GI74318474 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0042] tRNA-dihydrouridine synthase 
TIGRFAM ID[TIGR00737] putative TIM-barrel protein, nifR3 family 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCATCG GTTCCCACCT CCTGAAAAAC CGCCTGATCG TCGCCCCGAT GGCCGGCGTG 
ACCGATCGGC CGTTTCGCCA GCTGTGCAAG AAGCTCGGCG CGGGCATGGC GGTCTCGGAA
ATGGTGACGT CGAACTCGCT GCTGTACGGC TCGGCCAAGA CGGCGCGGCG CGCCAACCAC
GAAGGCGAGG TCGACCCGAT CAGCGTCCAG ATCGCCGGCG CCGATCCGCG GATGATGGCC
GAGGCGGCGC GCCACAACGC CGACCGCGGC GCCCAGATCA TCGACATCAA CATGGGGTGC
CCGGCGAAGA AGGTCTGCAA CGTGATGGCC GGCTCGGCGC TGCTGCAGGA CGAGGCGCTC
GTCGGACGCA TCCTCGACGC CGTCGTCGCG GCCGTGCCCG AGCTGCCGGT GACGCTGAAG
ATCCGCACCG GCTGGGATCG CGAACACCGC AACGCACTCG CCATCCTCGG GATCGCCGAG
AACGCCGGCG TAAAGGCGCT CGCGATCCAC GGCCGCACAC GCGCCTGCGG CTACTCGGGC
GAGGCCGAAT ACGACACGAT CCGCGCGGTG AAGGCCGCGG CGCGGATTCC GGTCATCGCC
AACGGTGACA TCACGACCCC GGAAAAAGCG CGCCACGTGC TCGAACACAC GGGCGCCGAC
GCGGTCATGA TCGGCCGCGC CGCCCAGGGG CGGCCCTGGA TCTTCCGCGA GATCGAGCAT
TACCTGCGCA CCGGCGAACA CCTGCCGCAG CCTGAAGTGG CCGAAATCCA CCGCGTGCTG
CTCGATCACC TCCACGACCT CTACGGCTTC TACGGCGAAG TCACCGGGGT GCGCGTCGCG
CGCAAGCACA TCTCCTGGTA CACGCGCGGG CTCGTCGGCA GCAGCGCTTT TCGCCACGCC
ATGAACCGGC TCGACTCGGT CGCCGAGCAG CTTGCCGTCG TCAACGACTA TTTCGCCCAG
GCGGCGCGCG CGGACGTCCG CCTCCGCTAC GAAGCCGGCC AAGACAACAA TAACGCGGAC
GACCTGCTGC CGGCCTCACG GCTCGCGGCA TAA
 
Protein sequence
MRIGSHLLKN RLIVAPMAGV TDRPFRQLCK KLGAGMAVSE MVTSNSLLYG SAKTARRANH 
EGEVDPISVQ IAGADPRMMA EAARHNADRG AQIIDINMGC PAKKVCNVMA GSALLQDEAL
VGRILDAVVA AVPELPVTLK IRTGWDREHR NALAILGIAE NAGVKALAIH GRTRACGYSG
EAEYDTIRAV KAAARIPVIA NGDITTPEKA RHVLEHTGAD AVMIGRAAQG RPWIFREIEH
YLRTGEHLPQ PEVAEIHRVL LDHLHDLYGF YGEVTGVRVA RKHISWYTRG LVGSSAFRHA
MNRLDSVAEQ LAVVNDYFAQ AARADVRLRY EAGQDNNNAD DLLPASRLAA