| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_2453 |
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| Symbol | |
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| ID | 3671772 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | + |
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| Start bp | 2522451 |
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| End bp | 2525174 |
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| Gene Length | 2724 bp |
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| Protein Length | 907 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637711159 |
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| Product | DNA polymerase I |
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| Protein accession | YP_316211 |
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| Protein GI | 74318471 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0258] 5'-3' exonuclease (including N-terminal domain of PolI)
[COG0749] DNA polymerase I - 3'-5' exonuclease and polymerase domains |
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| TIGRFAM ID | [TIGR00593] DNA polymerase I |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAACGATC CTAGTGTAAG TCAGCCCGGC AAGACCCTGT TGTTGGTGGA CGGCTCGTCC
TATCTGTACC GCGCCTTTCA TGCGCTGCCG GACCTGCGCA ACGCGGCGGG CGAACCGACC
AGTGCGATCA AGGGCGTTCT CGCCATGCTG CACAGGCTGC GCAAGGATTA CGCGGCCGAT
TATATCGCCT GCGTGTTCGA CGCGAAGGGC AAGACCTTCC GCGACGATCT CTATCCTGCG
TACAAGGCGA ACCGCCCGGC GATGCCGGAC GATCTGCGCA GCCAGATCGA ACCTCTGCAC
GAGGCCATCC GCGCCGAGGG CTGGCCGCTC GTCGTCATCG ACGGCGTCGA GGCGGACGAC
GTGATCGGCA CACTCGTGCG CCACGCCGCA CAAAAAGGCA TCCGCAGCAT CGTCTCGACC
GGCGACAAGG ACATGGCCCA GCTCGTCGAC GGCCACGTCA CGCTCGTCAA CACCATGAGC
CTCGAGACGC TCGACGAAGC CGGCGTCGTC GCCAAGTTCG GCGTGGCGCC CGACCGCATC
ATCGACTACC TCACGCTCGT CGGCGACGCG GTCGACAACG TGCCCGGGGT CGCCAAATGC
GGGCCGAAGA CCGCCGCGAA ATGGCTCGCC GAATACGGCA CGCTCGACAA CCTGCTCGCC
CACGCCGACG CGGTCAAAGG CGCGGTCGGA GAGAACCTGC GCGCGGTCGT CGACTGGCTG
CCGCAGGCCC GCGCGCTGCT CACGATCAAG ACCGACGTCG CGCTGCCCTT CGATTTCGAC
GACCTCGTGC TGAAGCCGCG CGACATCGAC GCCCTGCGCG GGCTGTTCGA GCGCTACGAA
TTCCGTACCT GGCTGCGCGA ACTCGACGCC TCGCCGGCGA CGGCCGTTTC GTCCGAACCC
GACTGCAGCG GATCGCACCG CGCCGGCTAC GAGATCATCC TGAGCGAAGC GCAGCTCGAC
GCCTGGGTCG CGCGGGTCGC GACCGCCGAC GCCTTCGCGC TCGACGTCGA GGCGAGCAGC
GCGAGCCCGC TGCAGTGCGA ACTGATCGGC CTGGCGTTCG CGGTCTGCGA AGGCGAGGCT
GCGTATCTGC CGCTCGGCCA CCATTACGCC GGCGCGCCGG CGCAGCTCTC GCGCGCCGCG
GCTTTCGCCA GAATCAAGCC CCTGCTCGAG GAGCGCGCGG CGAAAATCGT CGGCCAGAAT
CTCAAATACG CGCGCCACGT GCTCGCCAAC TGCGGCATCG CGCTCGGCGG CGCGGCCGAC
GACACGCTGC TGCAATCCTA CGTGCTCGAA GCGCATCAGC CGCACGAACT CGCGAGCCTC
GCCAATCGCC ATCTCGGGCT CGCGACGCTC GCCTGCGACG AACTCACCGG CAAGGGCGCG
GCGCGCATCG GCTTCGATCA GGTCGCGGTC GAGCGCGCCG GCGAATACGC GGCCGAGCAG
GCGGACGTCA CGCTGCGCGT CCGCGGCCAG CTCGCAGCGC GCATCGCGGC GTCGGAGAAA
CTCGAATACG TCTACCGCGA AATCGAGCTC CCGGTTTCCG AAGTGCTCTT CCGCATGGAA
CGCGCGGGCG TGCTGCTCGA TCGCGCGCTC CTCGCGGCGC AAAGCGGCGA GCTCGGCCGC
AAGATGCTCG AACTCGAGCA ACGCGCCTTC CAGGAAGCGG GCCAGCCTTT CAATCTCGGC
TCGCCCAAGC AGATCGGCGA CATTCTGTTC GCGCAAAAAG GCCTTCCGAT CCTCAAGAAA
ACACCGGGAG GGGCGCCGTC GACCGACGAG GAAACGCTCG AACTGCTCGC ACTCGACCAC
CCGATCGCGC GTGCGATCCT CGACTACCGC GGACTCGCCA AACTGAAGTC GACCTACACC
GACAAGCTGC CGCAGATGGT GCATCCGTTG ACCGGCCGGC TGCACACAAG CTATTCGCAG
GCGACCGCGG TGACCGGCCG GCTCGCGAGC GTGGAGCCGA ACCTGCAGAA CATCCCGGCG
CGGACGGCGG AAGGGCGCCG CATCCGTGAG GCCTTCATCG CGCCGCCCGG CCACCTGCTC
GTCTCGGCCG ACTATTCGCA GATCGAGCTC AGGATCATGG CGCATCTATC GGACGACGCC
GGCCTGCTTC ACGCCTTCGC CAACGATCTC GACATCCACA CCGCGACCGC CGCCGAGGTG
TTCGGCGTCC CGCTCGACGC GGTCAGCGCC GAGCAGCGCC GGATCGCCAA GGTCATCAAT
TTCGGCCTGA TCTACGGCAT GTCGGCCTTC GGCCTGGCGA GCCAGCTCAA TCTCGAGCGC
AGCGCCGCGC AGGCGTGGAT CGACCGTTAC TTCACGCGCT ATCCCGGCGT CGCGAACTAC
ATGCTGCGCA CCCGCGAATC GGCGCGCGCG CAGGGCTACG TCGAGACCGT CTTCGGCCGC
CGCCTCTATC TCCCTGAAAT CAACGCGAGG AATCCGCAAC GCCGACAAGG CGCCGAACGC
GCCGCGATCA ATGCGCCGAT GCAGGGCACG GCCGCCGACC TCATCAAGCT GGCGATGATC
GCAGTGCAGC GGTGGATCGA CAGCGAAAGA CTCGGCACGC GCCTACTGCT GCAGGTCCAC
GACGAACTGA TCCTCGAGGT GCCTGAACAC GAGCTCGAAC GCGTCCGCGC CGAACTGCCG
TCGCACATGT GCGACGTCGC CGCGCTCAAG GTACCGCTGC GGGTCGGCGT CGGCGTCGGC
GGCAACTGGG AAGCGGCGCA CTGA
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| Protein sequence | MNDPSVSQPG KTLLLVDGSS YLYRAFHALP DLRNAAGEPT SAIKGVLAML HRLRKDYAAD
YIACVFDAKG KTFRDDLYPA YKANRPAMPD DLRSQIEPLH EAIRAEGWPL VVIDGVEADD
VIGTLVRHAA QKGIRSIVST GDKDMAQLVD GHVTLVNTMS LETLDEAGVV AKFGVAPDRI
IDYLTLVGDA VDNVPGVAKC GPKTAAKWLA EYGTLDNLLA HADAVKGAVG ENLRAVVDWL
PQARALLTIK TDVALPFDFD DLVLKPRDID ALRGLFERYE FRTWLRELDA SPATAVSSEP
DCSGSHRAGY EIILSEAQLD AWVARVATAD AFALDVEASS ASPLQCELIG LAFAVCEGEA
AYLPLGHHYA GAPAQLSRAA AFARIKPLLE ERAAKIVGQN LKYARHVLAN CGIALGGAAD
DTLLQSYVLE AHQPHELASL ANRHLGLATL ACDELTGKGA ARIGFDQVAV ERAGEYAAEQ
ADVTLRVRGQ LAARIAASEK LEYVYREIEL PVSEVLFRME RAGVLLDRAL LAAQSGELGR
KMLELEQRAF QEAGQPFNLG SPKQIGDILF AQKGLPILKK TPGGAPSTDE ETLELLALDH
PIARAILDYR GLAKLKSTYT DKLPQMVHPL TGRLHTSYSQ ATAVTGRLAS VEPNLQNIPA
RTAEGRRIRE AFIAPPGHLL VSADYSQIEL RIMAHLSDDA GLLHAFANDL DIHTATAAEV
FGVPLDAVSA EQRRIAKVIN FGLIYGMSAF GLASQLNLER SAAQAWIDRY FTRYPGVANY
MLRTRESARA QGYVETVFGR RLYLPEINAR NPQRRQGAER AAINAPMQGT AADLIKLAMI
AVQRWIDSER LGTRLLLQVH DELILEVPEH ELERVRAELP SHMCDVAALK VPLRVGVGVG
GNWEAAH
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