| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_2420 |
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| Symbol | |
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| ID | 3673930 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | + |
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| Start bp | 2491150 |
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| End bp | 2492283 |
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| Gene Length | 1134 bp |
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| Protein Length | 377 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637711126 |
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| Product | pilus retraction protein PilT |
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| Protein accession | YP_316178 |
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| Protein GI | 74318438 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5008] Tfp pilus assembly protein, ATPase PilU |
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| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAATGA ACGCAGAAAA AACCGTCCAC GACCTGCTGC GCCTGATGCT GGCGAAGAAC
GCGTCCGACC TTTTCATCAC CGCGGGATTC CCGCCCGCGA TCAAGGTCGA CGGCAAGATC
ACCCCGGTCT CGAACCAGAG CCTGACGCCC GCGCACACGA GCGAGCTCGC GCGCTCGATC
ATGAACGATC GCCAGTGGAA AGATTTCGAG GCGACCAACG AATCGAACTT CGCGATCAGC
CCGCCCGAGA TCGGGCGCTT CCGCGTCAAC GTCTTCGTGC AACAGGGCCG CGTCGGCATC
GTCATGCGGA CGATCAATAC CAAGATCCCG AAGATGGAAG ACCTCAACCT GCCGCCGATC
CTGCGCGACG TCGCGATGAT CAAGCGCGGC CTCGTCGTCT TCGTCGGCGG CACCGGCACC
GGTAAATCGA CCTCGCTCGC CGCGATGGTC GGCTACCGCA ACGAGAACGA CGCCGGCCAC
ATCATCACCG TCGAGGACCC GATCGAATAC GTGCACGAGC ACCGCAAATC GATCGTCAGC
CAGCGCGAGG TCGGCATCGA CACCGACAAC TGGTTCTCCG CGCTCAAGAA CACGCTGCGC
CAGGCGCCCG ACGTCATCCT GATCGGCGAA ATCCGCGACC GGGAGACCAT GGAATACGCG
ATCGCCTTCG CCGAAACCGG CCACCTGTGC CTGTCTACGC TGCACGCCAA CAGCGCCAAC
CAGGCGCTCG ACCGCATCAT CAACTTCTTC CCCGAGGAGA AGCGCGATCA ATTGCTGATG
GACTTGTCGC TCAACCTCAA GTCCTTCATC TCGCAGCGCC TGATTCCGCG AAAAGGCAGC
AACGGCCGCG TCGCCGCCGT CGAAATCCTG CTCAACTCGC CGCTCATCGC CGACCTGATC
TTCAAGGGCC ACGTCCACGA GATCAAGGAG ATCATGGCCA AGTCCCGCGA ACTCGGCATG
CAGACCTTCG ACCAGGCCCT GTTCGACCTC TACGAAGCCG GACTGATCTC CTACGAGGAC
GCGCTAAGAA ACGCCGACAG CCTCAACGAC CTACGCCTGC AGATCAAGCT GCACGGCCAG
GAGGCCAAGG GGCGGGACAT GATGGCGGGG TTGGATCATC TCGATATTGT TTAA
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| Protein sequence | MAMNAEKTVH DLLRLMLAKN ASDLFITAGF PPAIKVDGKI TPVSNQSLTP AHTSELARSI
MNDRQWKDFE ATNESNFAIS PPEIGRFRVN VFVQQGRVGI VMRTINTKIP KMEDLNLPPI
LRDVAMIKRG LVVFVGGTGT GKSTSLAAMV GYRNENDAGH IITVEDPIEY VHEHRKSIVS
QREVGIDTDN WFSALKNTLR QAPDVILIGE IRDRETMEYA IAFAETGHLC LSTLHANSAN
QALDRIINFF PEEKRDQLLM DLSLNLKSFI SQRLIPRKGS NGRVAAVEIL LNSPLIADLI
FKGHVHEIKE IMAKSRELGM QTFDQALFDL YEAGLISYED ALRNADSLND LRLQIKLHGQ
EAKGRDMMAG LDHLDIV
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