| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_2407 |
|---|
| Symbol | |
|---|
| ID | 3672287 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiobacillus denitrificans ATCC 25259 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007404 |
|---|
| Strand | - |
|---|
| Start bp | 2479111 |
|---|
| End bp | 2479575 |
|---|
| Gene Length | 465 bp |
|---|
| Protein Length | 154 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637711113 |
|---|
| Product | RNA methyltransferase CspR |
|---|
| Protein accession | YP_316165 |
|---|
| Protein GI | 74318425 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0219] Predicted rRNA methylase (SpoU class) |
|---|
| TIGRFAM ID | [TIGR00185] rRNA methylase, putative, group 2 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTGACA TTGTTTTATA TCAGCCCGAA ATCCCGCCCA ATACCGGCAA TCTGATCCGC
CTCGCCGCCA ACACCGGCGC GCGCCTGCAC CTCGTCGAGC CGCTCGGCTT CGACCTGTCG
GACAAGCAGC TTGTACGCGC CGGGCTCGAC TATCACGACA TGGCAAGCGT CCACGTGCAT
GCCGACTGGA CCGCGGTGCA GGAGGCCCTC GCCGGCCGGC GCTGGTTCGC GCTCACGACC
CGGGGCAGTC GCAGCTATGC GAGCGTGGCG TTCGAGGCCG GCGACGTGCT GCTGTTCGGC
CCCGAGTCCC GCGGCCTGCC GGCCGACCTG CTCGCGCATT TCGACGTCGA CCAACGGCTG
CGTCTGCCGA TGCTGCCGGG TTCGCGCAGC CTCAATCTTT CCAACGCGGT CAGCGTCGTG
GTGTTCGAGG CTTGGCGGCA GAACGGGTTT GCCGGCGGGG GGTGA
|
|---|
| Protein sequence | MFDIVLYQPE IPPNTGNLIR LAANTGARLH LVEPLGFDLS DKQLVRAGLD YHDMASVHVH
ADWTAVQEAL AGRRWFALTT RGSRSYASVA FEAGDVLLFG PESRGLPADL LAHFDVDQRL
RLPMLPGSRS LNLSNAVSVV VFEAWRQNGF AGGG
|
|---|
| |