| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_2388 |
|---|
| Symbol | |
|---|
| ID | 3671432 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiobacillus denitrificans ATCC 25259 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007404 |
|---|
| Strand | + |
|---|
| Start bp | 2460031 |
|---|
| End bp | 2462001 |
|---|
| Gene Length | 1971 bp |
|---|
| Protein Length | 656 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637711093 |
|---|
| Product | carbamoyl-phosphate synthase L chain, ATP-binding |
|---|
| Protein accession | YP_316146 |
|---|
| Protein GI | 74318406 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
|---|
| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.415567 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTTTTT CCGGCGCGGT CCATAGCGTA ACGGAAAACA TAAGCGGAGA AAAGCCTGTG
GCTGTACGTG GAAGAAAACC CGGCGGCGGC GCCAAGAAAC CCGAGGCACT GCTCCCCCTG
AAGGAGTTGA CGCCCGTCGA GGCCGAGGCA CGCCGTACCC AGCTGAAGAA TCTCATCATT
CTGGGCAAGG AGCGCGGCTT TCTGACGTAC GCCGAGATCA ACGATCACCT GCCCGACGAG
GTGCTGGACG CCGACCAGAT CGAAGGCGTG ATCAGCATGA TCAACGACAT GGGCATTCAG
GTCTACGACG AAGCGCCGGA CGCCGAGACG CTGCTCATGC AGGAAGCGGC GCCGGCTGTC
GCGGACGAGG ACGTCGTCGC AGAGGCCGAG CAGGCGCTGA CGACGGTCGA TTCCGAATTC
GGGCGGACGA CCGACCCCGT GCGCATGTAC ATGCGCGAAA TGGGCTCGGT CGACCTGCTC
ACGCGCGAGG GCGAAATCGA GATCGCGAAG CGCATCGAGG AAGGCCTGCG CCATATGGTG
CAGGCGATTT CGTCGTGCCC GCTGACGATC CAGCAGATCC TCGACATGGC GGCCCAGGTC
GAGAAGGACG AACTGCGCAT CGACGAGTTG ATCGATGGTT TCGTCGAGGC GGAAACCGAA
GCTGCCGCCG AGGAGGAAAC CGCGGCGGGC GACGATGAAA CCGACGAGGA CGACGAGGAC
GCGAGCGCCG CCGTGGCCGC CGCCAACCTT GCGCAACTCA AGGCCGAGGC GCTCGCGCAG
TTCGACTACA TCCGCAAGGC CTACAAAAAG GCGCAGAACG CCCACGTCAA ATATGGACTC
GGCAGCGCGC AGCACATGAA GGCACAGGCC GAAGTCACCG AACTGCTGAT GGCGATCCGC
TTCTCGGTGC GCCAGGTGGA CAACCTTTGC GAGCAGATCC GCAGCGCGGT CGAAGAAGTG
CGCTCGCACG AGCGCAAGAT CATGGAGTTT TGCGTAAACC GCTCGGGCAT GCCGCGGGCG
CACTTCATCA AGGCCTTCCC CGGCAACGAG ACCAATCTCG CCTGGCTGGA CAGGGAAATC
GCCGCCAAGA AAGCCTACTG CTCGACGCTC TCGAAAGTCC AGTACGAGGT CAAGGCGCAC
CAGGAGGCCT TGATCGCGAT GCAGGACCGG GTCGGCCTGC CGATCAAGAA TCTCAAGGAC
ATCAACAAGC AGATGTCGAC CGGCGAAGCC AAGGCGCGGC GCGCGAAGCG CGAGATGATC
GAGGCGAACC TGCGGCTGGT GATCTCGATC GCGAAGAAGT ACACCAACCG CGGCCTGCAG
TTCCTCGACC TGATCCAGGA AGGCAACATC GGCCTCATGA AGGCCGTGGA CAAATTCGAA
TACCGCCGCG GCTACAAGTT CTCGACCTAC GCGACCTGGT GGATCCGGCA GGCGATCACG
CGCTCGATCG CGGACCAGGC CCGCACGATC CGCATCCCGG TACACATGAT CGAGACGATC
AACAAGATGA ACCGGATCAG CCGGCAGATT CTGCAGGAAA CGGGCATCGA GCCGGACCCC
GCGACGCTCG CGATCAAGAT GGAAATGCCG GAAGACAAGA TCCGCAAGAT CATGAAGATC
GCGAAGGAGC CGATCTCGAT GGAGACACCG ATCGGCGACG ACGAGGATTC CCATCTCGGC
GACTTCATCG AGGACGCGAG CACGCTCTCG CCCGACGACT CCGCGATCTA CGCCAACCTG
CGCGACGCCA CGCGGGAGGT GCTCGACAGC CTGACCTCGC GCGAAGCCAA GGTCCTGCGC
ATGCGCTTCG GTATCGAGAT GAACACCGAC CACACACTCG AGGAAGTCGG CAAGCAGTTC
GACGTGACCC GCGAGCGCAT TCGGCAGATC GAAGCGAAGG CCCTGCGCAA GCTGCGCCAT
CCGACCCGCT CCGAAAAGCT GAAGAGCTTC GTCGGCAGCG GCGAACAGTA A
|
|---|
| Protein sequence | MIFSGAVHSV TENISGEKPV AVRGRKPGGG AKKPEALLPL KELTPVEAEA RRTQLKNLII
LGKERGFLTY AEINDHLPDE VLDADQIEGV ISMINDMGIQ VYDEAPDAET LLMQEAAPAV
ADEDVVAEAE QALTTVDSEF GRTTDPVRMY MREMGSVDLL TREGEIEIAK RIEEGLRHMV
QAISSCPLTI QQILDMAAQV EKDELRIDEL IDGFVEAETE AAAEEETAAG DDETDEDDED
ASAAVAAANL AQLKAEALAQ FDYIRKAYKK AQNAHVKYGL GSAQHMKAQA EVTELLMAIR
FSVRQVDNLC EQIRSAVEEV RSHERKIMEF CVNRSGMPRA HFIKAFPGNE TNLAWLDREI
AAKKAYCSTL SKVQYEVKAH QEALIAMQDR VGLPIKNLKD INKQMSTGEA KARRAKREMI
EANLRLVISI AKKYTNRGLQ FLDLIQEGNI GLMKAVDKFE YRRGYKFSTY ATWWIRQAIT
RSIADQARTI RIPVHMIETI NKMNRISRQI LQETGIEPDP ATLAIKMEMP EDKIRKIMKI
AKEPISMETP IGDDEDSHLG DFIEDASTLS PDDSAIYANL RDATREVLDS LTSREAKVLR
MRFGIEMNTD HTLEEVGKQF DVTRERIRQI EAKALRKLRH PTRSEKLKSF VGSGEQ
|
|---|
| |